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Os02g0149800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein phosphatase 2C family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.6 (0.0162) R2 : 0.917
β1 : -- (--) R2dD : -- R2D : --
β2 : 3.46 (0.0488) R2dC : 1.27 R2C : 0.532
β3 : 1.93 (0.0491) R2dE : 0.382 R2E : -0.35
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0941 (0.034) R2dN8 : 0.00173 R2N8 : -0.00695
σ : 0.303
deviance : 42.39
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C
peak time of C : 7.59
E
wheather : radiation
threshold : 1.1
memory length : 224
response mode : < th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 11.8
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
34.64 0.277 11.6 -0.55 3.52 2.08 1.18 0.278 -0.147 7.89 6.132 259 11.1 --
34.69 0.274 11.6 -0.539 3.55 2.1 0.935 -- -0.146 7.92 5.478 242 10.9 --
36.56 0.282 11.6 -0.514 3.61 2.14 -- -0.366 -0.147 7.97 5.305 226 10.6 --
37.11 0.284 11.6 -0.517 3.53 2.11 -- -- -0.153 7.99 5.307 232 10.5 --
56.84 0.351 11.7 -0.477 -- 3.5 -- 0.594 -0.192 -- 0.3943 798 7.57 --
71.6 0.397 11.6 -0.594 2.87 -- 1.06 -- -0.22 5.82 -- -- -- --
74.34 0.404 11.6 -0.588 2.88 -- -- -- -0.225 5.8 -- -- -- --
58.09 0.355 11.7 -0.467 -- 3.56 -- -- -0.169 -- 0.4161 809 7.9 --
42.39 0.303 11.6 -- 3.46 1.93 -- -- -0.0941 7.59 1.1 224 11.8 --
504.05 1.05 11.7 -0.499 -- -- -- -- -0.157 -- -- -- -- --
83.44 0.427 11.6 -- 2.87 -- -- -- -0.159 5.81 -- -- -- --
61.82 0.366 11.7 -- -- 3.69 -- -- -0.104 -- 0.306 828 8.4 --
510.61 1.05 11.7 -- -- -- -- -- -0.102 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 33.16 temperature 10.0 270 > th dose dependent rect. 13 4
2 33.26 temperature 15.0 270 > th dose dependent rect. 12 6
9 33.90 temperature 25.0 270 > th dose independent rect. 13 4
10 33.90 temperature 25.0 270 > th dose independent rect. 12 6
11 34.10 radiation 1.0 270 > th dose independent rect. 12 7
22 34.17 temperature 10.0 270 > th dose dependent rect. 12 15
26 34.64 radiation 1.0 270 > th dose independent rect. 13 4
33 35.56 radiation 1.0 270 < th dose independent sin 18 NA
34 35.61 radiation 1.0 270 > th dose independent sin 18 NA
38 35.71 humidity 90.0 270 < th dose independent rect. 13 4
40 35.73 radiation 10.0 270 < th dose dependent sin 17 NA
42 35.74 humidity 90.0 270 < th dose independent rect. 12 6
63 36.21 radiation 1.0 270 < th dose dependent sin 19 NA
94 36.74 temperature 10.0 270 > th dose dependent rect. 22 20
96 36.77 precipitation 0.1 270 < th dose independent rect. 13 4
97 36.77 precipitation 0.1 270 < th dose dependent rect. 13 4
104 37.06 temperature 10.0 270 > th dose independent rect. 13 4
106 37.06 atmosphere 1010.0 270 < th dose independent rect. 13 4
108 37.06 temperature 10.0 270 > th dose independent rect. 17 20
112 37.19 wind 1.0 270 > th dose independent rect. 13 4
115 37.20 wind 9.0 270 < th dose independent rect. 13 4
135 37.35 wind 9.0 270 < th dose independent rect. 17 20
136 37.37 temperature 15.0 10 > th dose dependent rect. 14 6
145 37.58 humidity 50.0 270 > th dose independent rect. 17 20
150 37.71 radiation 1.0 270 < th dose independent rect. 15 8
151 37.73 atmosphere 995.0 270 > th dose independent rect. 17 20
161 37.92 radiation 1.0 270 < th dose independent rect. 8 15
162 37.93 radiation 1.0 270 < th dose dependent rect. 15 7
164 37.93 temperature 10.0 270 > th dose dependent rect. 11 21
181 38.13 atmosphere 995.0 270 > th dose independent rect. 13 4
188 38.25 radiation 1.0 270 < th dose dependent rect. 8 14
213 38.53 precipitation 0.1 270 < th dose independent rect. 17 20
214 38.53 precipitation 0.1 270 < th dose dependent rect. 17 20
222 38.66 atmosphere 1010.0 270 < th dose independent rect. 11 7
267 39.13 temperature 30.0 270 < th dose dependent rect. 8 15
293 39.42 humidity 60.0 270 > th dose independent rect. 17 6
296 39.43 temperature 30.0 270 < th dose independent rect. 17 6
317 39.54 radiation 1.0 270 > th dose dependent sin 14 NA
328 39.64 radiation 1.0 270 > th dose dependent rect. 13 5
404 40.15 temperature 15.0 270 > th dose independent rect. 23 18
406 40.17 temperature 30.0 270 < th dose independent rect. 17 19
411 40.22 temperature 15.0 270 > th dose independent rect. 22 10
415 40.25 temperature 30.0 270 < th dose independent rect. 22 10
416 40.25 humidity 50.0 270 > th dose independent rect. 22 10
418 40.25 atmosphere 995.0 270 > th dose independent rect. 22 10
419 40.25 temperature 10.0 270 > th dose independent rect. 8 14
426 40.30 wind 9.0 270 < th dose independent rect. 22 10
439 40.41 radiation 40.0 270 < th dose independent rect. 22 10
449 40.52 wind 1.0 270 > th dose dependent rect. 13 4
465 40.70 radiation 40.0 270 < th dose dependent rect. 22 10
507 40.93 humidity 90.0 10 < th dose independent rect. 14 6
520 40.99 temperature 20.0 10 > th dose independent rect. 14 6
522 41.03 radiation 40.0 90 < th dose independent rect. 13 6
531 41.09 wind 9.0 270 < th dose independent rect. 8 14
641 41.57 atmosphere 1015.0 270 < th dose independent rect. 23 18
649 41.60 precipitation 0.1 270 < th dose independent rect. 22 10
650 41.60 precipitation 0.1 270 < th dose dependent rect. 22 10
657 41.62 wind 9.0 270 < th dose independent rect. 17 6
658 41.62 wind 9.0 270 < th dose independent rect. 23 18
680 41.74 temperature 10.0 270 > th dose independent rect. 17 6
688 41.75 humidity 90.0 270 < th dose dependent rect. 13 4
713 41.83 temperature 15.0 270 > th dose independent rect. 22 20
727 41.90 atmosphere 1015.0 270 < th dose independent rect. 22 10
755 42.04 wind 1.0 270 > th dose independent rect. 17 19
783 42.19 atmosphere 995.0 270 > th dose independent rect. 17 6
795 42.23 temperature 10.0 1440 > th dose independent rect. 15 5
798 42.23 temperature 10.0 1440 > th dose independent rect. 20 19
818 42.27 humidity 50.0 270 > th dose dependent rect. 17 6
831 42.31 precipitation 0.1 270 < th dose independent rect. 23 18
836 42.31 precipitation 0.1 270 < th dose dependent rect. 23 18
860 42.46 precipitation 0.1 270 < th dose independent rect. 3 10
864 42.46 precipitation 0.1 270 < th dose dependent rect. 3 10
914 42.67 precipitation 0.1 270 < th dose independent rect. 13 14
916 42.67 precipitation 0.1 270 < th dose dependent rect. 13 14
921 42.69 humidity 50.0 270 > th dose independent rect. 7 15
981 42.92 atmosphere 995.0 270 > th dose independent rect. 23 18