Os02g0148700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os02g0148700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 75.56 | 0.408 | 7.82 | 1.47 | 1.01 | 2.23 | -1.42 | 2.2 | -0.0353 | 21.3 | 20.45 | 6072 | -- | -- |
| 76.84 | 0.408 | 7.76 | 1.5 | 1 | 1.31 | -1.42 | -- | -0.00653 | 21.4 | 21.53 | 6034 | -- | -- |
| 82.53 | 0.423 | 7.83 | 1.52 | 1.01 | 2.48 | -- | 2.63 | -0.0527 | 21.3 | 19.91 | 5953 | -- | -- |
| 83.84 | 0.426 | 7.76 | 1.54 | 1.01 | 1.34 | -- | -- | -0.0134 | 21.3 | 21.27 | 5906 | -- | -- |
| 140.21 | 0.555 | 7.77 | 1.14 | -- | 1.93 | -- | 0.405 | -0.163 | -- | 19.91 | 5953 | -- | -- |
| 92.89 | 0.452 | 7.82 | 0.823 | 1 | -- | -1.47 | -- | -0.264 | 21.3 | -- | -- | -- | -- |
| 100.61 | 0.47 | 7.82 | 0.877 | 1.01 | -- | -- | -- | -0.262 | 21.3 | -- | -- | -- | -- |
| 133.93 | 0.541 | 7.76 | 1.16 | -- | 1.68 | -- | -- | -0.123 | -- | 21.27 | 5906 | -- | -- |
| 114.03 | 0.5 | 7.83 | -- | 0.967 | 0.85 | -- | -- | -0.301 | 21.1 | 21.27 | 5906 | -- | -- |
| 160.16 | 0.591 | 7.79 | 0.881 | -- | -- | -- | -- | -0.266 | -- | -- | -- | -- | -- |
| 120.88 | 0.514 | 7.84 | -- | 1.01 | -- | -- | -- | -0.359 | 21.3 | -- | -- | -- | -- |
| 165.46 | 0.601 | 7.78 | -- | -- | 0.912 | -- | -- | -0.222 | -- | 24.7 | 2898 | -- | -- |
| 180.64 | 0.627 | 7.82 | -- | -- | -- | -- | -- | -0.364 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 72.74 | wind | 3 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 2 | 72.80 | wind | 3 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 3 | 73.46 | wind | 1 | 43200 | > th | dose dependent | rect. | 1 | 1 |
| 4 | 73.53 | radiation | 10 | 4320 | > th | dose dependent | rect. | 5 | 2 |
| 17 | 73.97 | wind | 5 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 21 | 74.34 | humidity | 90 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 22 | 74.40 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 14 |
| 23 | 74.44 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 14 |
| 25 | 74.45 | humidity | 80 | 14400 | > th | dose dependent | rect. | 12 | 2 |
| 26 | 74.48 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 28 | 74.49 | wind | 9 | 43200 | > th | dose dependent | rect. | 16 | 16 |
| 29 | 74.51 | humidity | 80 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 30 | 74.51 | wind | 9 | 43200 | > th | dose dependent | rect. | 17 | 14 |
| 31 | 74.56 | radiation | 30 | 4320 | < th | dose independent | rect. | 3 | 5 |
| 37 | 74.62 | radiation | 30 | 4320 | < th | dose independent | rect. | 6 | 2 |
| 39 | 74.64 | radiation | 30 | 4320 | < th | dose independent | rect. | 17 | 15 |
| 49 | 74.72 | wind | 9 | 43200 | < th | dose independent | rect. | 20 | 7 |
| 52 | 74.76 | wind | 9 | 43200 | > th | dose independent | rect. | 20 | 7 |
| 53 | 74.77 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 3 |
| 54 | 74.79 | wind | 9 | 43200 | < th | dose independent | rect. | 20 | 4 |
| 55 | 74.80 | temperature | 20 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 56 | 74.80 | wind | 9 | 43200 | < th | dose independent | rect. | 20 | 11 |
| 58 | 74.81 | wind | 9 | 43200 | < th | dose independent | rect. | 17 | 16 |
| 59 | 74.81 | wind | 9 | 43200 | > th | dose independent | rect. | 16 | 17 |
| 64 | 74.86 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 11 |
| 65 | 74.87 | wind | 9 | 43200 | > th | dose independent | rect. | 20 | 4 |
| 78 | 74.94 | temperature | 20 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 83 | 74.97 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 10 |
| 87 | 75.00 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 11 |
| 92 | 75.02 | temperature | 20 | 4320 | < th | dose dependent | rect. | 3 | 1 |
| 94 | 75.03 | wind | 3 | 43200 | < th | dose dependent | rect. | 23 | 3 |
| 103 | 75.08 | wind | 7 | 43200 | > th | dose dependent | rect. | 20 | 12 |
| 106 | 75.11 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 3 |
| 107 | 75.12 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 6 |
| 108 | 75.13 | wind | 5 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 113 | 75.16 | wind | 9 | 43200 | > th | dose dependent | rect. | 20 | 9 |
| 114 | 75.17 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 1 |
| 116 | 75.18 | temperature | 20 | 4320 | < th | dose dependent | rect. | 22 | 6 |
| 120 | 75.19 | wind | 1 | 43200 | > th | dose dependent | rect. | 23 | 3 |
| 128 | 75.22 | wind | 9 | 43200 | < th | dose independent | sin | 11 | NA |
| 130 | 75.23 | wind | 9 | 43200 | > th | dose independent | sin | 11 | NA |
| 131 | 75.23 | wind | 5 | 43200 | < th | dose independent | rect. | 23 | 1 |
| 132 | 75.23 | wind | 9 | 43200 | > th | dose dependent | rect. | 20 | 4 |
| 136 | 75.24 | wind | 9 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 144 | 75.27 | wind | 5 | 43200 | > th | dose dependent | rect. | 23 | 1 |
| 157 | 75.32 | wind | 1 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 177 | 75.37 | humidity | 90 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 180 | 75.38 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 6 |
| 208 | 75.45 | wind | 9 | 14400 | > th | dose independent | rect. | 6 | 5 |
| 235 | 75.50 | temperature | 10 | 1440 | > th | dose dependent | rect. | 1 | 3 |
| 240 | 75.52 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 6 |
| 243 | 75.54 | wind | 7 | 43200 | > th | dose dependent | sin | 11 | NA |
| 247 | 75.55 | temperature | 10 | 1440 | > th | dose dependent | rect. | 3 | 1 |
| 252 | 75.56 | wind | 9 | 43200 | > th | dose dependent | sin | 13 | NA |
| 262 | 75.57 | temperature | 20 | 4320 | < th | dose dependent | sin | 11 | NA |
| 285 | 75.60 | radiation | 30 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 429 | 75.75 | wind | 9 | 14400 | < th | dose independent | rect. | 6 | 5 |
| 436 | 75.76 | atmosphere | 1015 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 438 | 75.76 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 8 |
| 439 | 75.76 | atmosphere | 1015 | 14400 | < th | dose independent | rect. | 13 | 8 |
| 442 | 75.76 | wind | 9 | 43200 | < th | dose dependent | rect. | 23 | 1 |
| 451 | 75.77 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 5 |
| 460 | 75.78 | radiation | 10 | 4320 | > th | dose independent | rect. | 5 | 2 |
| 473 | 75.79 | atmosphere | 1015 | 14400 | > th | dose independent | rect. | 12 | 1 |
| 518 | 75.83 | atmosphere | 1015 | 14400 | > th | dose independent | rect. | 12 | 10 |
| 531 | 75.84 | temperature | 20 | 4320 | < th | dose dependent | rect. | 5 | 1 |
| 552 | 75.86 | humidity | 90 | 14400 | > th | dose independent | rect. | 7 | 3 |
| 571 | 75.88 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 8 |
| 642 | 75.93 | temperature | 20 | 30 | > th | dose independent | rect. | 3 | 23 |
| 644 | 75.93 | humidity | 80 | 14400 | > th | dose dependent | rect. | 10 | 1 |
| 670 | 75.94 | atmosphere | 1015 | 14400 | > th | dose dependent | rect. | 12 | 1 |
| 677 | 75.95 | temperature | 20 | 1440 | < th | dose independent | sin | 6 | NA |
| 736 | 75.99 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 5 |
| 740 | 75.99 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 15 |
| 758 | 76.00 | atmosphere | 1015 | 14400 | > th | dose dependent | rect. | 11 | 13 |
| 762 | 76.01 | temperature | 20 | 1440 | > th | dose independent | sin | 6 | NA |
| 767 | 76.01 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 15 |
| 776 | 76.02 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 11 |
| 844 | 76.06 | atmosphere | 1015 | 14400 | > th | dose independent | rect. | 16 | 5 |
| 865 | 76.07 | wind | 9 | 14400 | < th | dose independent | rect. | 9 | 2 |
| 978 | 76.13 | wind | 9 | 14400 | > th | dose independent | rect. | 9 | 2 |