Os02g0148600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os02g0148600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 317.8 | 0.838 | 3.88 | -0.239 | 0.61 | 14.6 | 0.239 | 31.1 | -0.322 | 22.3 | 1015 | 1449 | -- | -- |
| 327.49 | 0.849 | 3.77 | -0.377 | 0.579 | 1.33 | 0.112 | -- | -0.314 | 22.3 | 1015 | 1449 | -- | -- |
| 317.73 | 0.83 | 3.88 | -0.225 | 0.61 | 15 | -- | 31.9 | -0.314 | 22.3 | 1015 | 1425 | -- | -- |
| 327.54 | 0.848 | 3.77 | -0.381 | 0.578 | 1.33 | -- | -- | -0.314 | 22.3 | 1015 | 1425 | -- | -- |
| 339.43 | 0.858 | 3.86 | -0.23 | -- | 15.9 | -- | 34.1 | -0.295 | -- | 1015 | 1404 | -- | -- |
| 334.07 | 0.857 | 3.77 | -0.376 | 0.618 | -- | 0.137 | -- | -0.329 | 22.4 | -- | -- | -- | -- |
| 334.14 | 0.856 | 3.78 | -0.381 | 0.618 | -- | -- | -- | -0.329 | 22.4 | -- | -- | -- | -- |
| 347.57 | 0.872 | 3.75 | -0.373 | -- | 1.61 | -- | -- | -0.309 | -- | 1015 | 1404 | -- | -- |
| 331.37 | 0.852 | 3.76 | -- | 0.576 | 1.33 | -- | -- | -0.271 | 22.2 | 1015 | 1425 | -- | -- |
| 357.45 | 0.883 | 3.76 | -0.371 | -- | -- | -- | -- | -0.327 | -- | -- | -- | -- | -- |
| 337.98 | 0.86 | 3.77 | -- | 0.616 | -- | -- | -- | -0.286 | 22.3 | -- | -- | -- | -- |
| 351.23 | 0.876 | 3.75 | -- | -- | 1.61 | -- | -- | -0.268 | -- | 1015 | 1404 | -- | -- |
| 361.09 | 0.887 | 3.75 | -- | -- | -- | -- | -- | -0.286 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 312.66 | atmosphere | 1005.0 | 90 | < th | dose dependent | rect. | 8 | 1 |
| 14 | 315.99 | atmosphere | 1010.0 | 270 | > th | dose independent | rect. | 23 | 8 |
| 15 | 316.52 | atmosphere | 1010.0 | 720 | > th | dose dependent | rect. | 22 | 1 |
| 16 | 316.73 | atmosphere | 1015.0 | 1440 | > th | dose dependent | rect. | 22 | 14 |
| 18 | 316.97 | atmosphere | 1015.0 | 1440 | > th | dose dependent | rect. | 23 | 12 |
| 21 | 317.12 | atmosphere | 1010.0 | 720 | > th | dose independent | rect. | 23 | 1 |
| 22 | 317.16 | temperature | 20.0 | 10 | > th | dose independent | rect. | 11 | 18 |
| 24 | 317.46 | atmosphere | 1015.0 | 1440 | > th | dose independent | rect. | 23 | 13 |
| 25 | 317.56 | atmosphere | 1010.0 | 10 | > th | dose dependent | rect. | 24 | 10 |
| 26 | 317.67 | atmosphere | 1010.0 | 270 | > th | dose dependent | rect. | 23 | 8 |
| 28 | 317.73 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 23 | 13 |
| 30 | 317.83 | atmosphere | 1015.0 | 1440 | > th | dose dependent | sin | 7 | NA |
| 33 | 317.87 | atmosphere | 1015.0 | 1440 | > th | dose dependent | rect. | 15 | 21 |
| 47 | 318.16 | radiation | 20.0 | 30 | < th | dose dependent | rect. | 9 | 1 |
| 48 | 318.21 | atmosphere | 1005.0 | 30 | < th | dose dependent | rect. | 4 | 7 |
| 52 | 318.26 | atmosphere | 1015.0 | 1440 | > th | dose dependent | rect. | 22 | 22 |
| 61 | 318.31 | temperature | 20.0 | 10 | > th | dose independent | sin | 14 | NA |
| 73 | 318.38 | temperature | 20.0 | 10 | < th | dose independent | rect. | 17 | 9 |
| 85 | 318.58 | temperature | 20.0 | 10 | > th | dose independent | rect. | 11 | 22 |
| 89 | 318.63 | atmosphere | 1015.0 | 1440 | > th | dose dependent | rect. | 10 | 14 |
| 98 | 318.65 | temperature | 20.0 | 10 | < th | dose independent | sin | 15 | NA |
| 131 | 318.68 | temperature | 20.0 | 10 | < th | dose independent | rect. | 13 | 15 |
| 132 | 318.68 | atmosphere | 1015.0 | 1440 | > th | dose dependent | no | NA | NA |
| 177 | 318.74 | radiation | 1.0 | 10 | > th | dose independent | rect. | 17 | 2 |
| 198 | 318.81 | temperature | 20.0 | 10 | < th | dose independent | rect. | 13 | 13 |
| 207 | 318.94 | temperature | 20.0 | 10 | > th | dose independent | rect. | 16 | 13 |
| 216 | 319.09 | atmosphere | 1010.0 | 90 | > th | dose dependent | rect. | 23 | 11 |
| 238 | 319.36 | radiation | 20.0 | 30 | < th | dose independent | rect. | 9 | 1 |
| 252 | 319.50 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 24 | 8 |
| 253 | 319.50 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 24 | 8 |
| 255 | 319.51 | temperature | 25.0 | 270 | > th | dose independent | rect. | 5 | 2 |
| 260 | 319.53 | atmosphere | 1015.0 | 1440 | > th | dose dependent | sin | 19 | NA |
| 272 | 319.70 | temperature | 20.0 | 10 | > th | dose independent | rect. | 19 | 10 |
| 281 | 319.76 | temperature | 20.0 | 10 | > th | dose independent | rect. | 11 | 14 |
| 312 | 319.96 | atmosphere | 1015.0 | 720 | < th | dose independent | rect. | 20 | 16 |
| 323 | 320.07 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 18 | 9 |
| 331 | 320.16 | temperature | 20.0 | 10 | > th | dose independent | rect. | 7 | 22 |
| 337 | 320.19 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 18 | 11 |
| 347 | 320.25 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 19 | 7 |
| 376 | 320.38 | atmosphere | 1010.0 | 720 | > th | dose dependent | sin | 14 | NA |
| 392 | 320.49 | temperature | 20.0 | 10 | < th | dose independent | rect. | 10 | 18 |
| 477 | 320.94 | atmosphere | 1000.0 | 10 | < th | dose independent | rect. | 9 | 1 |
| 494 | 320.98 | atmosphere | 1015.0 | 1440 | > th | dose independent | rect. | 22 | 22 |
| 579 | 321.27 | temperature | 25.0 | 10 | < th | dose dependent | sin | 13 | NA |
| 598 | 321.33 | temperature | 25.0 | 90 | < th | dose dependent | sin | 14 | NA |
| 606 | 321.37 | wind | 3.0 | 10 | < th | dose dependent | rect. | 9 | 2 |
| 612 | 321.42 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 12 | 15 |
| 615 | 321.43 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 20 | 16 |
| 616 | 321.43 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 20 | 16 |
| 618 | 321.45 | temperature | 20.0 | 90 | < th | dose independent | rect. | 22 | 5 |
| 622 | 321.45 | atmosphere | 1015.0 | 720 | < th | dose independent | rect. | 6 | 16 |
| 644 | 321.53 | atmosphere | 1010.0 | 10 | < th | dose dependent | rect. | 6 | 1 |
| 655 | 321.57 | atmosphere | 1015.0 | 1440 | > th | dose independent | sin | 6 | NA |
| 671 | 321.59 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 6 | 1 |
| 672 | 321.60 | atmosphere | 1010.0 | 10 | > th | dose independent | rect. | 23 | 11 |
| 721 | 321.70 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 12 | 17 |
| 847 | 322.03 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 13 | 13 |
| 859 | 322.05 | atmosphere | 1000.0 | 90 | < th | dose independent | rect. | 3 | 7 |
| 860 | 322.05 | atmosphere | 1000.0 | 10 | < th | dose independent | rect. | 4 | 7 |
| 865 | 322.06 | temperature | 20.0 | 270 | < th | dose independent | rect. | 23 | 1 |
| 896 | 322.11 | atmosphere | 1000.0 | 270 | < th | dose independent | rect. | 6 | 1 |
| 905 | 322.13 | temperature | 20.0 | 10 | < th | dose independent | rect. | 22 | 6 |
| 917 | 322.15 | temperature | 20.0 | 10 | < th | dose independent | rect. | 22 | 4 |
| 992 | 322.37 | temperature | 20.0 | 30 | > th | dose independent | rect. | 20 | 12 |