Os02g0146900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF1677, Oryza sativa family protein.
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Os02g0146900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF1677, Oryza sativa family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 28.98 | 0.253 | 10.2 | 0.515 | 0.399 | 0.645 | 0.169 | -0.877 | -0.0102 | 19 | 2.637 | 1520 | -- | -- |
| 29.62 | 0.253 | 10.2 | 0.454 | 0.406 | 0.805 | 0.127 | -- | -0.0199 | 18.5 | 1.97 | 1546 | -- | -- |
| 29.03 | 0.251 | 10.2 | 0.506 | 0.403 | 0.66 | -- | -0.855 | -0.00973 | 18.9 | 2.69 | 1532 | -- | -- |
| 29.63 | 0.254 | 10.2 | 0.431 | 0.416 | 0.794 | -- | -- | -0.0118 | 18.5 | 2.15 | 1546 | -- | -- |
| 37.36 | 0.285 | 10.2 | 0.509 | -- | 0.731 | -- | -0.832 | -0.00442 | -- | 2.851 | 1517 | -- | -- |
| 34.76 | 0.276 | 10.2 | 0.289 | 0.444 | -- | -0.0322 | -- | -0.13 | 20.1 | -- | -- | -- | -- |
| 34.76 | 0.276 | 10.2 | 0.29 | 0.444 | -- | -- | -- | -0.13 | 20.1 | -- | -- | -- | -- |
| 37.87 | 0.287 | 10.2 | 0.431 | -- | 0.82 | -- | -- | -0.0223 | -- | 2.249 | 1513 | -- | -- |
| 33.79 | 0.271 | 10.2 | -- | 0.401 | 0.543 | -- | -- | -0.094 | 19.2 | 2.894 | 1532 | -- | -- |
| 45.59 | 0.316 | 10.2 | 0.286 | -- | -- | -- | -- | -0.135 | -- | -- | -- | -- | -- |
| 36.98 | 0.284 | 10.2 | -- | 0.442 | -- | -- | -- | -0.162 | 20.2 | -- | -- | -- | -- |
| 42.23 | 0.303 | 10.2 | -- | -- | 0.638 | -- | -- | -0.101 | -- | 2.902 | 1522 | -- | -- |
| 47.75 | 0.323 | 10.2 | -- | -- | -- | -- | -- | -0.167 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 27.75 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 8 |
| 2 | 27.76 | radiation | 1 | 1440 | < th | dose dependent | rect. | 12 | 5 |
| 7 | 27.91 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 19 |
| 8 | 27.94 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 19 |
| 14 | 28.13 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 6 |
| 18 | 28.18 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 6 |
| 24 | 28.26 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 16 |
| 31 | 28.27 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 14 |
| 96 | 28.44 | humidity | 80 | 1440 | < th | dose independent | rect. | 24 | 16 |
| 101 | 28.46 | humidity | 80 | 1440 | > th | dose independent | rect. | 24 | 17 |
| 110 | 28.48 | humidity | 80 | 1440 | > th | dose independent | rect. | 12 | 2 |
| 131 | 28.55 | humidity | 80 | 1440 | < th | dose independent | rect. | 12 | 2 |
| 164 | 28.61 | radiation | 1 | 1440 | < th | dose independent | sin | 19 | NA |
| 170 | 28.62 | radiation | 1 | 1440 | > th | dose independent | sin | 19 | NA |
| 179 | 28.64 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 4 |
| 240 | 28.74 | humidity | 90 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 258 | 28.79 | humidity | 90 | 720 | > th | dose dependent | rect. | 20 | 3 |
| 276 | 28.83 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 16 |
| 282 | 28.84 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 12 |
| 283 | 28.84 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 14 |
| 290 | 28.86 | humidity | 80 | 1440 | < th | dose independent | sin | 2 | NA |
| 367 | 28.96 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 4 |
| 388 | 28.96 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 4 |
| 437 | 29.02 | humidity | 80 | 1440 | > th | dose independent | sin | 2 | NA |
| 526 | 29.13 | radiation | 1 | 1440 | < th | dose dependent | sin | 20 | NA |
| 527 | 29.13 | humidity | 80 | 1440 | > th | dose dependent | rect. | 11 | 3 |
| 532 | 29.14 | radiation | 1 | 1440 | < th | dose independent | rect. | 13 | 1 |
| 567 | 29.18 | humidity | 60 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 582 | 29.21 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 587 | 29.21 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 599 | 29.23 | radiation | 1 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 610 | 29.25 | humidity | 90 | 720 | < th | dose independent | rect. | 20 | 3 |
| 719 | 29.36 | humidity | 60 | 14400 | > th | dose independent | rect. | 3 | 5 |
| 779 | 29.44 | humidity | 60 | 14400 | > th | dose independent | rect. | 5 | 3 |
| 789 | 29.45 | radiation | 1 | 1440 | > th | dose independent | rect. | 18 | 23 |
| 806 | 29.46 | radiation | 1 | 1440 | < th | dose independent | rect. | 18 | 23 |
| 807 | 29.46 | humidity | 50 | 720 | > th | dose dependent | rect. | 18 | 8 |
| 870 | 29.52 | wind | 7 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 877 | 29.53 | radiation | 1 | 1440 | < th | dose independent | rect. | 5 | 14 |
| 878 | 29.53 | radiation | 1 | 1440 | < th | dose independent | rect. | 5 | 22 |
| 886 | 29.54 | radiation | 1 | 1440 | > th | dose independent | rect. | 5 | 14 |
| 897 | 29.54 | radiation | 1 | 1440 | < th | dose independent | rect. | 24 | 19 |
| 909 | 29.55 | radiation | 1 | 1440 | < th | dose independent | no | NA | NA |
| 941 | 29.56 | radiation | 1 | 1440 | > th | dose independent | no | NA | NA |