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Os02g0146500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Phosphatidate cytidylyltransferase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.8 (0.0145) R2 : 0.749
β1 : -1.3 (0.053) R2dD : 0.342 R2D : 0.293
β2 : 1.06 (0.0377) R2dC : 0.433 R2C : 0.408
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.217 (0.0309) R2dN8 : 0.0363 R2N8 : -0.0164
σ : 0.272
deviance : 33.82
__
_____
C
peak time of C : 6.56
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
26.26 0.241 10.8 -1.34 1.11 -0.205 -0.589 1.77 -0.227 6.28 51.99 75 -- --
33.18 0.27 10.8 -1.29 1.1 -0.152 -0.216 -- -0.221 6.32 50.98 72 -- --
27.02 0.242 10.8 -1.34 1.12 -0.237 -- 1.66 -0.224 6.22 51 58 -- --
33.27 0.27 10.8 -1.3 1.11 -0.188 -- -- -0.221 6.21 50.6 48 -- --
60.07 0.361 10.8 -1.27 -- 0.888 -- 0.317 -0.167 -- 66.87 464 -- --
33.49 0.271 10.8 -1.29 1.06 -- -0.372 -- -0.218 6.63 -- -- -- --
33.82 0.272 10.8 -1.3 1.06 -- -- -- -0.217 6.56 -- -- -- --
60.12 0.361 10.8 -1.3 -- 0.936 -- -- -0.13 -- 67 480 -- --
77.66 0.413 10.8 -- 1.09 -0.188 -- -- -0.0767 6.28 50.6 48 -- --
91.84 0.448 10.8 -1.27 -- -- -- -- -0.195 -- -- -- -- --
78.21 0.414 10.8 -- 1.04 -- -- -- -0.0723 6.63 -- -- -- --
104.16 0.475 10.8 -- -- 0.973 -- -- -0.00596 -- 62.44 501 -- --
134.52 0.541 10.8 -- -- -- -- -- -0.054 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 25.99 humidity 50 90 > th dose dependent rect. 21 23
3 26.00 humidity 90 90 < th dose dependent rect. 17 23
4 26.01 humidity 90 90 < th dose dependent rect. 2 14
5 26.01 humidity 90 90 < th dose dependent rect. 19 21
9 26.09 humidity 90 90 < th dose dependent rect. 6 10
15 26.12 temperature 15 720 > th dose independent rect. 9 20
17 26.14 humidity 50 90 > th dose dependent rect. 13 23
19 26.16 humidity 50 90 > th dose dependent rect. 15 23
20 26.17 humidity 90 90 < th dose dependent rect. 9 7
22 26.18 humidity 90 90 < th dose dependent sin 0 NA
23 26.20 temperature 15 270 > th dose independent rect. 22 15
29 26.23 humidity 90 270 < th dose dependent rect. 7 7
34 26.26 humidity 80 720 < th dose independent rect. 9 3
45 26.29 humidity 90 720 < th dose dependent rect. 4 9
56 26.31 humidity 50 90 > th dose dependent no NA NA
72 26.34 humidity 90 90 < th dose dependent rect. 9 23
88 26.41 temperature 10 43200 > th dose independent rect. 9 11
92 26.41 humidity 90 90 < th dose dependent rect. 2 21
94 26.41 humidity 50 10 > th dose dependent rect. 5 23
96 26.42 humidity 90 90 < th dose dependent rect. 9 14
128 26.47 humidity 90 90 < th dose dependent rect. 6 17
129 26.47 humidity 60 90 > th dose dependent rect. 1 23
131 26.48 humidity 70 90 > th dose independent rect. 15 22
132 26.48 humidity 70 90 < th dose independent rect. 17 23
159 26.52 humidity 70 90 < th dose independent rect. 19 21
167 26.53 humidity 70 90 < th dose independent sin 1 NA
176 26.54 temperature 15 720 > th dose independent rect. 17 13
198 26.56 humidity 90 10 < th dose dependent rect. 9 23
199 26.57 humidity 70 90 < th dose independent rect. 6 10
211 26.57 humidity 90 90 < th dose dependent no NA NA
222 26.57 humidity 50 10 > th dose dependent rect. 16 20
223 26.57 humidity 90 90 < th dose dependent rect. 9 20
224 26.57 humidity 90 90 < th dose dependent rect. 6 22
226 26.57 humidity 50 10 > th dose dependent rect. 16 23
274 26.64 temperature 15 270 > th dose independent rect. 8 13
294 26.66 humidity 70 10 > th dose independent rect. 21 23
295 26.66 humidity 70 90 < th dose independent rect. 9 23
296 26.66 humidity 70 90 < th dose independent rect. 15 23
326 26.70 temperature 15 720 > th dose independent rect. 21 22
347 26.72 humidity 70 90 > th dose independent rect. 13 23
375 26.76 humidity 70 90 < th dose independent no NA NA
497 26.78 humidity 90 10 < th dose dependent rect. 3 20
529 26.80 temperature 15 1440 > th dose independent rect. 9 11
542 26.80 humidity 70 90 > th dose independent rect. 21 23
583 26.82 humidity 90 10 < th dose dependent rect. 11 23
631 26.84 humidity 90 10 < th dose dependent rect. 24 23
648 26.85 humidity 90 90 < th dose dependent rect. 15 23
657 26.87 humidity 70 10 < th dose independent rect. 11 23
706 26.89 humidity 50 30 > th dose dependent rect. 23 23
735 26.92 humidity 70 90 > th dose independent no NA NA
750 26.92 humidity 90 10 < th dose dependent rect. 6 23
756 26.93 radiation 40 720 < th dose independent rect. 5 19
758 26.93 humidity 90 10 < th dose dependent no NA NA
772 26.93 humidity 60 90 > th dose dependent rect. 7 23
773 26.93 humidity 60 90 > th dose dependent rect. 9 23
775 26.94 radiation 40 90 < th dose independent sin 18 NA
776 26.94 humidity 70 90 < th dose independent rect. 9 11
804 26.94 humidity 50 90 > th dose dependent rect. 11 23
831 26.96 humidity 70 270 < th dose independent rect. 11 1
834 26.96 humidity 70 90 > th dose independent rect. 10 23
862 26.97 humidity 50 10 > th dose dependent rect. 11 23
869 26.98 humidity 70 90 > th dose independent rect. 1 23
892 26.99 humidity 60 90 > th dose dependent rect. 19 23
903 27.01 temperature 15 720 > th dose independent rect. 18 18
913 27.02 humidity 90 270 < th dose independent sin 0 NA
929 27.03 humidity 70 10 > th dose independent rect. 5 23
930 27.03 humidity 70 10 < th dose independent rect. 15 23
995 27.05 radiation 40 10 < th dose dependent rect. 21 23
998 27.06 temperature 15 720 > th dose independent rect. 19 15