Os02g0145500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os02g0145500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 54.16 | 0.346 | 8.58 | -1.18 | 0.461 | 0.123 | 0.23 | -4.75 | -0.0634 | 15 | 28.73 | 3990 | -- | -- |
| 55.46 | 0.347 | 8.49 | -0.386 | 0.456 | -0.347 | 0.241 | -- | -0.0446 | 14.5 | 29.63 | 5762 | -- | -- |
| 54.34 | 0.343 | 8.58 | -1.19 | 0.463 | 0.131 | -- | -4.84 | -0.0633 | 15 | 28.75 | 3974 | -- | -- |
| 55.29 | 0.346 | 8.47 | -0.337 | 0.47 | -0.376 | -- | -- | 0.00476 | 15 | 29.54 | 5787 | -- | -- |
| 66.39 | 0.379 | 8.58 | -1.17 | -- | 0.0449 | -- | -4.72 | -0.0806 | -- | 28.7 | 3987 | -- | -- |
| 62.22 | 0.37 | 8.47 | -0.457 | 0.501 | -- | 0.338 | -- | 0.0501 | 14.9 | -- | -- | -- | -- |
| 62.61 | 0.371 | 8.47 | -0.449 | 0.503 | -- | -- | -- | 0.0521 | 15 | -- | -- | -- | -- |
| 67.6 | 0.383 | 8.49 | -0.337 | -- | -0.515 | -- | -- | -0.0472 | -- | 30.04 | 4015 | -- | -- |
| 58.21 | 0.355 | 8.47 | -- | 0.481 | -0.383 | -- | -- | 0.0437 | 14.9 | 29.47 | 5763 | -- | -- |
| 77.12 | 0.41 | 8.47 | -0.471 | -- | -- | -- | -- | 0.0391 | -- | -- | -- | -- | -- |
| 67.93 | 0.386 | 8.45 | -- | 0.512 | -- | -- | -- | 0.102 | 15 | -- | -- | -- | -- |
| 70.5 | 0.391 | 8.48 | -- | -- | -0.59 | -- | -- | -0.0215 | -- | 29.7 | 4015 | -- | -- |
| 82.97 | 0.425 | 8.46 | -- | -- | -- | -- | -- | 0.0913 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 52.79 | temperature | 25 | 4320 | > th | dose dependent | rect. | 22 | 1 |
| 4 | 53.13 | temperature | 25 | 4320 | > th | dose dependent | rect. | 20 | 5 |
| 20 | 53.46 | temperature | 25 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 21 | 53.48 | humidity | 70 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 24 | 53.51 | temperature | 25 | 4320 | > th | dose dependent | rect. | 20 | 11 |
| 34 | 53.68 | temperature | 15 | 720 | > th | dose dependent | rect. | 3 | 3 |
| 38 | 53.71 | temperature | 25 | 720 | > th | dose dependent | rect. | 18 | 1 |
| 52 | 53.85 | temperature | 30 | 4320 | > th | dose independent | rect. | 11 | 1 |
| 58 | 53.89 | temperature | 30 | 4320 | < th | dose independent | rect. | 11 | 1 |
| 59 | 53.89 | temperature | 30 | 4320 | > th | dose independent | rect. | 18 | 18 |
| 61 | 53.91 | wind | 1 | 4320 | < th | dose independent | rect. | 4 | 1 |
| 62 | 53.91 | temperature | 30 | 4320 | < th | dose independent | rect. | 18 | 18 |
| 65 | 53.94 | temperature | 30 | 4320 | > th | dose independent | rect. | 8 | 4 |
| 68 | 53.94 | temperature | 30 | 4320 | < th | dose independent | rect. | 6 | 6 |
| 71 | 53.94 | temperature | 30 | 4320 | < th | dose independent | rect. | 4 | 8 |
| 74 | 53.94 | temperature | 30 | 4320 | < th | dose independent | rect. | 2 | 10 |
| 85 | 53.95 | temperature | 30 | 4320 | < th | dose independent | rect. | 8 | 4 |
| 92 | 53.95 | temperature | 30 | 4320 | < th | dose independent | rect. | 20 | 16 |
| 96 | 53.97 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 15 |
| 99 | 54.00 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 11 |
| 125 | 54.04 | temperature | 30 | 4320 | > th | dose independent | sin | 9 | NA |
| 145 | 54.07 | temperature | 30 | 4320 | < th | dose independent | sin | 9 | NA |
| 153 | 54.08 | temperature | 30 | 4320 | > th | dose dependent | rect. | 11 | 1 |
| 189 | 54.18 | temperature | 30 | 4320 | > th | dose dependent | rect. | 18 | 18 |
| 210 | 54.21 | temperature | 30 | 4320 | > th | dose dependent | rect. | 8 | 5 |
| 270 | 54.26 | wind | 1 | 4320 | > th | dose independent | rect. | 4 | 1 |
| 276 | 54.26 | temperature | 30 | 4320 | > th | dose dependent | sin | 8 | NA |
| 405 | 54.42 | temperature | 30 | 4320 | < th | dose independent | rect. | 17 | 2 |
| 458 | 54.46 | temperature | 30 | 4320 | < th | dose independent | rect. | 17 | 12 |
| 463 | 54.46 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 4 |
| 477 | 54.48 | temperature | 30 | 4320 | > th | dose independent | rect. | 16 | 2 |
| 479 | 54.48 | wind | 1 | 4320 | < th | dose dependent | rect. | 4 | 1 |
| 483 | 54.49 | humidity | 70 | 1440 | > th | dose independent | rect. | 17 | 1 |
| 520 | 54.51 | temperature | 25 | 4320 | > th | dose independent | rect. | 1 | 1 |
| 553 | 54.54 | temperature | 30 | 4320 | > th | dose independent | no | NA | NA |
| 554 | 54.54 | temperature | 30 | 4320 | > th | dose independent | rect. | 8 | 11 |
| 664 | 54.55 | radiation | 1 | 43200 | < th | dose dependent | rect. | 3 | 1 |
| 667 | 54.56 | temperature | 25 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 706 | 54.57 | temperature | 30 | 4320 | > th | dose independent | rect. | 10 | 23 |
| 763 | 54.61 | temperature | 30 | 4320 | < th | dose independent | rect. | 6 | 13 |
| 765 | 54.61 | temperature | 30 | 4320 | < th | dose independent | rect. | 4 | 15 |
| 791 | 54.62 | temperature | 30 | 4320 | < th | dose independent | no | NA | NA |
| 798 | 54.62 | temperature | 30 | 4320 | < th | dose independent | rect. | 8 | 11 |
| 879 | 54.62 | temperature | 30 | 4320 | > th | dose dependent | no | NA | NA |
| 981 | 54.62 | temperature | 30 | 4320 | > th | dose dependent | rect. | 10 | 23 |