Os02g0145000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, uncharacterized transcript.
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Os02g0145000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, uncharacterized transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 195.12 | 0.656 | 5.76 | -0.714 | 0.468 | 2.11 | 1.63 | -1.4 | -0.63 | 18.4 | 19.81 | 610 | 4.35 | 5.9 |
| 195.98 | 0.652 | 5.74 | -0.539 | 0.419 | 2.19 | 1.66 | -- | -0.582 | 19.5 | 19.03 | 605 | 4.34 | 6.14 |
| 201.05 | 0.66 | 5.75 | -0.67 | 0.507 | 1.99 | -- | -1.17 | -0.6 | 17.2 | 20.11 | 609 | 4.33 | 5.97 |
| 201.95 | 0.662 | 5.73 | -0.54 | 0.445 | 1.96 | -- | -- | -0.56 | 16.8 | 20.18 | 613 | 4.51 | 5.91 |
| 204.29 | 0.666 | 5.73 | -0.709 | -- | 2.17 | -- | -0.757 | -0.609 | -- | 19.54 | 647 | 4.92 | 5.72 |
| 261.17 | 0.758 | 5.66 | -0.227 | 1.42 | -- | 0.477 | -- | -0.282 | 14.6 | -- | -- | -- | -- |
| 261.94 | 0.758 | 5.65 | -0.215 | 1.42 | -- | -- | -- | -0.28 | 14.5 | -- | -- | -- | -- |
| 203.98 | 0.665 | 5.71 | -0.585 | -- | 2.15 | -- | -- | -0.538 | -- | 19.46 | 633 | 5.3 | 5.47 |
| 209.15 | 0.674 | 5.7 | -- | 0.49 | 1.83 | -- | -- | -0.463 | 16.5 | 20.2 | 605 | 4.82 | 5.48 |
| 381.18 | 0.912 | 5.66 | -0.275 | -- | -- | -- | -- | -0.315 | -- | -- | -- | -- | -- |
| 263.15 | 0.759 | 5.65 | -- | 1.43 | -- | -- | -- | -0.256 | 14.5 | -- | -- | -- | -- |
| 212.88 | 0.68 | 5.7 | -- | -- | 2.07 | -- | -- | -0.483 | -- | 19.16 | 637 | 5.32 | 5.41 |
| 383.17 | 0.914 | 5.66 | -- | -- | -- | -- | -- | -0.285 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 202.57 | temperature | 20 | 720 | > th | dose dependent | rect. | 4 | 6 |
| 28 | 208.37 | temperature | 10 | 90 | > th | dose dependent | sin | 2 | NA |
| 50 | 210.21 | temperature | 20 | 270 | > th | dose dependent | sin | 4 | NA |
| 52 | 210.27 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 14 |
| 75 | 211.31 | temperature | 20 | 720 | > th | dose dependent | rect. | 8 | 1 |
| 87 | 211.71 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 9 |
| 131 | 213.13 | temperature | 30 | 90 | < th | dose dependent | sin | 2 | NA |
| 144 | 213.56 | temperature | 30 | 720 | < th | dose dependent | rect. | 2 | 9 |
| 181 | 214.38 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 4 |
| 192 | 214.66 | temperature | 20 | 1440 | > th | dose independent | rect. | 24 | 1 |
| 197 | 214.79 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 1 |
| 254 | 215.85 | temperature | 25 | 10 | > th | dose dependent | rect. | 8 | 14 |
| 268 | 216.00 | temperature | 25 | 10 | > th | dose dependent | rect. | 8 | 21 |
| 280 | 216.21 | temperature | 25 | 10 | > th | dose dependent | rect. | 8 | 18 |
| 314 | 216.63 | temperature | 25 | 30 | > th | dose dependent | rect. | 19 | 23 |
| 329 | 216.87 | temperature | 25 | 720 | > th | dose independent | rect. | 6 | 5 |
| 339 | 216.96 | temperature | 25 | 10 | > th | dose dependent | rect. | 8 | 12 |
| 368 | 217.26 | temperature | 25 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 424 | 217.84 | temperature | 25 | 10 | > th | dose dependent | rect. | 4 | 18 |
| 447 | 217.96 | temperature | 25 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 466 | 218.14 | temperature | 25 | 10 | > th | dose dependent | rect. | 4 | 23 |
| 468 | 218.15 | temperature | 25 | 10 | > th | dose dependent | no | NA | NA |
| 509 | 218.34 | temperature | 25 | 30 | > th | dose dependent | rect. | 8 | 10 |
| 574 | 218.73 | temperature | 10 | 270 | > th | dose dependent | rect. | 5 | 21 |
| 603 | 218.84 | temperature | 20 | 720 | > th | dose independent | sin | 8 | NA |
| 610 | 218.85 | temperature | 15 | 270 | > th | dose dependent | rect. | 6 | 17 |
| 674 | 219.12 | temperature | 25 | 30 | > th | dose dependent | rect. | 21 | 21 |
| 696 | 219.20 | temperature | 25 | 90 | > th | dose dependent | rect. | 16 | 23 |
| 703 | 219.22 | temperature | 25 | 270 | > th | dose dependent | rect. | 17 | 21 |
| 830 | 219.85 | temperature | 25 | 10 | > th | dose dependent | rect. | 16 | 23 |
| 886 | 220.20 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 4 |
| 905 | 220.38 | temperature | 30 | 10 | < th | dose dependent | rect. | 4 | 12 |
| 968 | 220.82 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 21 | 14 |
| 980 | 220.88 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 21 | 14 |