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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0144800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF1677, Oryza sativa family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.41 (0.0522) R2 : 0.0706
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -1.43 (0.266) R2dE : 0.0765 R2E : 0.0698
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0575 (0.121) R2dN8 : 0.000748 R2N8 : -0.00597
σ : 0.949
deviance : 414.76
__
_____
C
peak time of C : --
E
wheather : humidity
threshold : 93
memory length : 5382
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
400.76 0.941 3.4 0.461 0.409 -1.24 0.261 -0.874 0.0385 12 92 4320 -- --
401.64 0.933 3.4 0.502 0.408 -1.26 0.262 -- 0.0624 12.1 91.98 4307 -- --
401.03 0.933 3.4 0.473 0.408 -1.25 -- -0.864 0.0398 12.2 91.96 4315 -- --
401.9 0.934 3.4 0.514 0.402 -1.27 -- -- 0.0541 12.2 92 4305 -- --
407.45 0.94 3.4 0.454 -- -1.35 -- -0.822 0.0684 -- 90 5369 -- --
421.77 0.963 3.46 0.569 0.4 -- 0.343 -- -0.191 12 -- -- -- --
422.25 0.962 3.46 0.584 0.399 -- -- -- -0.189 12.2 -- -- -- --
408.36 0.941 3.4 0.503 -- -1.36 -- -- 0.0809 -- 90 5386 -- --
409.3 0.942 3.4 -- 0.412 -1.36 -- -- 0.0482 12.1 93 4310 -- --
432.28 0.972 3.47 0.571 -- -- -- -- -0.195 -- -- -- -- --
431.23 0.971 3.47 -- 0.391 -- -- -- -0.254 12.1 -- -- -- --
414.76 0.949 3.41 -- -- -1.43 -- -- 0.0575 -- 93 5382 -- --
440.87 0.98 3.48 -- -- -- -- -- -0.259 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 396.59 wind 1 43200 > th dose independent rect. 6 5
2 396.63 wind 1 43200 < th dose dependent rect. 6 6
3 396.97 wind 1 43200 > th dose independent rect. 5 8
5 397.29 humidity 80 4320 < th dose independent rect. 6 3
8 397.52 wind 3 90 < th dose independent rect. 12 11
13 397.94 wind 1 43200 < th dose independent rect. 6 6
14 397.99 humidity 80 4320 > th dose independent rect. 5 4
18 398.17 humidity 80 4320 < th dose independent rect. 8 1
23 398.37 wind 3 43200 > th dose independent rect. 2 1
24 398.42 humidity 50 4320 > th dose dependent rect. 22 1
27 398.51 wind 1 43200 > th dose independent rect. 7 3
36 398.70 humidity 90 14400 > th dose independent rect. 21 1
38 398.83 wind 1 43200 < th dose dependent rect. 5 18
39 398.84 wind 1 43200 < th dose independent rect. 3 23
43 399.08 wind 1 43200 > th dose independent rect. 3 23
45 399.11 wind 1 43200 > th dose independent sin 2 NA
48 399.14 wind 3 43200 < th dose independent rect. 2 1
53 399.22 wind 1 43200 > th dose independent rect. 5 23
54 399.25 humidity 90 4320 < th dose dependent rect. 17 18
56 399.31 humidity 90 4320 < th dose dependent rect. 15 20
58 399.37 humidity 90 14400 < th dose independent rect. 20 2
66 399.49 wind 1 43200 > th dose independent rect. 21 20
68 399.50 wind 5 90 < th dose dependent rect. 13 10
69 399.51 humidity 80 4320 > th dose independent rect. 8 1
70 399.51 wind 1 43200 > th dose independent rect. 21 23
79 399.60 wind 1 43200 > th dose independent rect. 18 23
83 399.66 wind 1 43200 > th dose independent rect. 24 23
93 399.81 wind 1 43200 > th dose independent no NA NA
94 399.81 humidity 90 4320 < th dose dependent rect. 21 2
102 399.86 humidity 90 720 > th dose independent rect. 5 15
104 399.86 wind 1 43200 > th dose independent rect. 15 23
115 399.98 humidity 70 14400 < th dose dependent rect. 18 15
131 400.08 humidity 70 43200 > th dose independent rect. 7 2
132 400.08 wind 1 43200 > th dose independent rect. 3 20
133 400.08 wind 1 43200 < th dose dependent sin 0 NA
135 400.09 humidity 70 43200 < th dose independent rect. 8 1
138 400.09 atmosphere 1000 270 < th dose independent rect. 19 15
156 400.17 humidity 50 4320 > th dose dependent rect. 15 20
166 400.22 wind 1 43200 > th dose independent rect. 10 23
193 400.39 wind 1 43200 < th dose independent rect. 19 23
201 400.46 wind 1 43200 < th dose independent rect. 21 23
209 400.53 humidity 70 90 < th dose independent rect. 19 12
213 400.54 wind 1 43200 > th dose independent rect. 5 17
225 400.60 humidity 80 4320 > th dose independent rect. 17 16
236 400.64 wind 1 43200 > th dose independent rect. 8 23
245 400.71 wind 1 43200 < th dose independent sin 1 NA
246 400.71 humidity 90 720 > th dose independent rect. 5 9
252 400.74 humidity 80 4320 < th dose dependent sin 11 NA
257 400.76 wind 1 43200 < th dose independent no NA NA
260 400.76 wind 1 43200 < th dose independent rect. 24 23
264 400.77 humidity 60 14400 > th dose independent rect. 17 16
265 400.77 humidity 80 4320 < th dose independent rect. 16 17
269 400.77 humidity 90 4320 < th dose dependent rect. 1 23
272 400.78 humidity 90 720 > th dose independent rect. 5 12
276 400.78 humidity 90 4320 < th dose dependent rect. 8 22
277 400.78 humidity 90 4320 < th dose dependent rect. 20 23
278 400.79 wind 3 4320 > th dose independent rect. 19 1
292 400.80 humidity 90 4320 < th dose dependent rect. 4 23
293 400.81 humidity 60 14400 < th dose independent rect. 18 15
295 400.81 humidity 90 4320 < th dose dependent no NA NA
300 400.82 wind 1 43200 < th dose independent rect. 8 23
307 400.84 humidity 50 4320 > th dose dependent rect. 4 20
324 400.89 wind 1 43200 < th dose independent rect. 15 23
346 400.93 wind 1 43200 < th dose independent rect. 21 21
350 400.94 humidity 50 4320 > th dose dependent rect. 15 9
352 400.95 atmosphere 1005 270 < th dose independent rect. 12 1
355 400.96 humidity 90 4320 < th dose dependent sin 15 NA
356 400.96 humidity 80 4320 > th dose dependent rect. 7 1
370 400.99 humidity 70 14400 < th dose dependent rect. 19 13
380 401.01 humidity 90 4320 < th dose dependent rect. 15 9
382 401.02 humidity 90 720 > th dose independent rect. 5 6
385 401.02 humidity 80 4320 < th dose dependent rect. 15 1
389 401.03 humidity 50 4320 > th dose dependent rect. 18 5
394 401.04 humidity 90 4320 < th dose dependent rect. 15 12
407 401.05 wind 5 43200 < th dose dependent rect. 1 1
428 401.08 temperature 20 90 < th dose dependent rect. 21 1
432 401.09 atmosphere 1005 90 < th dose independent rect. 13 3
461 401.13 humidity 90 720 > th dose independent rect. 5 4
463 401.13 wind 1 43200 < th dose independent rect. 5 18
556 401.24 atmosphere 1005 90 < th dose dependent rect. 13 3
572 401.26 atmosphere 1000 720 < th dose independent rect. 22 3
577 401.27 atmosphere 1000 10 < th dose independent rect. 19 16
592 401.29 atmosphere 1000 720 < th dose independent rect. 23 1
593 401.29 atmosphere 1000 10 < th dose independent rect. 23 12
599 401.30 temperature 20 90 < th dose independent rect. 20 1
612 401.31 humidity 50 4320 > th dose dependent no NA NA
624 401.32 humidity 50 4320 > th dose dependent rect. 20 23
637 401.34 wind 5 4320 < th dose dependent rect. 18 4
694 401.43 humidity 70 4320 > th dose dependent rect. 5 4
708 401.45 humidity 90 4320 < th dose dependent rect. 18 5
735 401.49 atmosphere 1000 720 < th dose independent rect. 20 7
742 401.50 wind 1 43200 > th dose independent rect. 3 15
815 401.60 wind 1 43200 < th dose dependent rect. 5 15
820 401.61 wind 3 4320 < th dose independent rect. 19 2
903 401.72 humidity 50 4320 > th dose dependent sin 17 NA
915 401.75 humidity 60 14400 < th dose independent rect. 16 17
979 401.83 humidity 80 4320 < th dose independent rect. 16 10