FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0144300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, unclassifiable transcript.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.98 (0.0338) R2 : 0.152
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.526 (0.0831) R2dC : 0.0745 R2C : 0.0564
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.45 (0.0711) R2dN8 : 0.096 R2N8 : 0.0779
σ : 0.637
deviance : 185.69
__
_____
C
peak time of C : 14.5
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
162.6 0.599 4.9 0.505 0.628 -1.06 -0.564 2.36 -0.162 16.4 20.23 706 -- --
166.76 0.601 4.92 0.17 0.552 -1.26 -0.526 -- -0.221 16.5 15.19 800 -- --
163.43 0.595 4.9 0.484 0.619 -1.06 -- 2.25 -0.165 16.4 20.06 716 -- --
165.57 0.599 4.96 0.0287 0.624 -1.21 -- -- -0.294 16.4 14.54 671 -- --
175.25 0.617 4.88 0.59 -- -1.13 -- 2.43 -0.143 -- 16 1059 -- --
182.47 0.633 4.99 -0.255 0.521 -- -0.595 -- -0.477 14.4 -- -- -- --
183.75 0.635 4.99 -0.271 0.521 -- -- -- -0.48 14.5 -- -- -- --
177.38 0.62 4.95 0.0461 -- -1.16 -- -- -0.295 -- -11.06 1059 -- --
165.59 0.599 4.96 -- 0.623 -1.2 -- -- -0.298 16.3 14.5 669 -- --
199.74 0.66 5 -0.293 -- -- -- -- -0.493 -- -- -- -- --
185.69 0.637 4.98 -- 0.526 -- -- -- -0.45 14.5 -- -- -- --
177.43 0.62 4.95 -- -- -1.14 -- -- -0.302 -- -6.208 1057 -- --
202.01 0.663 4.99 -- -- -- -- -- -0.46 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 157.13 wind 9 43200 < th dose independent rect. 18 3
2 157.41 wind 9 43200 > th dose independent rect. 18 3
3 157.74 wind 9 43200 > th dose dependent rect. 18 5
11 159.00 wind 5 43200 > th dose dependent rect. 13 8
14 159.13 wind 7 43200 < th dose independent rect. 14 2
15 159.13 wind 5 43200 > th dose dependent rect. 14 2
19 159.42 radiation 20 14400 < th dose dependent rect. 2 3
25 159.53 wind 7 43200 < th dose independent rect. 14 7
26 159.54 wind 7 43200 > th dose independent rect. 14 2
30 159.60 wind 9 43200 < th dose dependent rect. 20 1
32 159.63 wind 1 43200 > th dose dependent rect. 20 1
34 159.66 wind 5 14400 < th dose independent rect. 11 1
39 159.75 wind 7 43200 > th dose independent rect. 14 7
44 159.88 radiation 40 43200 > th dose independent rect. 9 2
55 160.07 radiation 40 43200 < th dose independent rect. 9 1
56 160.07 wind 5 43200 > th dose independent rect. 13 9
62 160.19 humidity 80 43200 > th dose independent rect. 21 1
64 160.20 wind 5 43200 > th dose independent rect. 11 11
68 160.24 humidity 80 43200 < th dose independent rect. 21 1
69 160.24 radiation 40 43200 > th dose independent rect. 7 4
89 160.27 radiation 40 43200 > th dose dependent rect. 9 2
96 160.33 wind 7 43200 < th dose independent rect. 13 12
97 160.33 radiation 30 14400 < th dose independent rect. 16 14
102 160.36 radiation 10 4320 < th dose independent rect. 18 13
104 160.40 radiation 10 4320 < th dose independent rect. 2 5
111 160.42 wind 5 43200 < th dose independent rect. 11 11
116 160.43 radiation 10 4320 < th dose independent rect. 20 11
127 160.45 radiation 10 4320 < th dose independent rect. 4 3
129 160.45 radiation 10 14400 < th dose dependent rect. 4 1
137 160.49 radiation 30 14400 < th dose independent rect. 16 4
139 160.49 wind 5 43200 > th dose independent rect. 16 5
172 160.57 temperature 15 270 > th dose dependent rect. 4 17
177 160.58 wind 5 14400 > th dose independent rect. 11 1
178 160.58 wind 5 43200 > th dose independent rect. 11 6
201 160.60 radiation 30 14400 < th dose independent rect. 16 7
284 160.76 wind 9 43200 > th dose dependent rect. 18 7
288 160.77 radiation 10 43200 > th dose dependent rect. 6 1
310 160.81 wind 5 43200 < th dose independent rect. 11 6
339 160.84 radiation 40 43200 > th dose dependent sin 10 NA
374 160.90 radiation 40 43200 > th dose independent sin 10 NA
413 160.92 radiation 10 4320 < th dose dependent rect. 22 7
445 161.00 wind 9 43200 > th dose dependent rect. 18 12
446 161.01 radiation 20 43200 > th dose independent rect. 6 2
485 161.02 temperature 15 270 > th dose dependent rect. 2 21
488 161.03 wind 5 43200 > th dose dependent sin 18 NA
627 161.17 wind 5 43200 > th dose independent sin 19 NA
652 161.19 radiation 40 43200 < th dose independent sin 9 NA
695 161.24 wind 7 43200 < th dose independent sin 19 NA
715 161.26 wind 7 43200 < th dose independent rect. 13 17
759 161.32 wind 7 43200 > th dose independent rect. 13 17
807 161.39 wind 9 43200 > th dose independent rect. 18 7
836 161.41 temperature 25 4320 > th dose dependent rect. 9 1
908 161.52 radiation 20 43200 < th dose independent rect. 5 4
919 161.52 radiation 20 43200 < th dose independent rect. 18 14
924 161.53 radiation 20 43200 < th dose independent rect. 6 2
978 161.57 radiation 1 4320 > th dose dependent rect. 4 2