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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0144200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF1677, Oryza sativa family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.05 (0.0328) R2 : 0.154
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -1.02 (0.115) R2dE : 0.159 R2E : 0.153
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0377 (0.0711) R2dN8 : 0.00073 R2N8 : -0.00462
σ : 0.61
deviance : 171.65
__
_____
C
peak time of C : --
E
wheather : radiation
threshold : 2.081
memory length : 2687
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
148.88 0.573 4.03 0.693 0.638 -0.877 0.384 -0.0832 0.124 13.6 12.27 1625 -- --
148.78 0.568 4.02 0.707 0.661 -0.905 0.375 -- 0.133 13.7 10.21 1652 -- --
149.31 0.569 4.02 0.723 0.668 -0.937 -- 0.0729 0.137 13.8 10.19 1677 -- --
148.98 0.568 4.02 0.7 0.727 -0.995 -- -- 0.134 13.8 4.117 1697 -- --
161.56 0.592 4.02 0.659 -- -1.05 -- 0.249 0.126 -- 1.311 2685 -- --
171.93 0.615 4.07 0.587 0.562 -- 0.555 -- -0.0615 13.6 -- -- -- --
173.14 0.616 4.07 0.605 0.561 -- -- -- -0.0587 13.5 -- -- -- --
161.59 0.592 4.03 0.622 -- -1.06 -- -- 0.127 -- 1.551 2684 -- --
161.44 0.592 4.04 -- 0.709 -0.98 -- -- 0.0795 13.9 3.487 1752 -- --
192.47 0.648 4.07 0.583 -- -- -- -- -0.0708 -- -- -- -- --
182.79 0.632 4.08 -- 0.551 -- -- -- -0.126 13.5 -- -- -- --
171.65 0.61 4.05 -- -- -1.02 -- -- 0.0377 -- 2.081 2687 -- --
201.43 0.662 4.09 -- -- -- -- -- -0.135 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 137.70 radiation 10.0 43200 > th dose independent rect. 8 3
2 137.84 radiation 10.0 43200 > th dose independent rect. 9 5
3 137.99 radiation 10.0 43200 > th dose independent rect. 10 1
18 140.50 wind 9.0 43200 < th dose independent rect. 11 2
20 140.91 wind 9.0 43200 > th dose dependent rect. 11 2
21 141.29 wind 9.0 43200 > th dose independent rect. 12 1
29 141.79 wind 1.0 43200 < th dose dependent rect. 17 1
35 142.29 wind 1.0 43200 < th dose dependent rect. 3 6
40 142.81 radiation 10.0 43200 > th dose independent rect. 13 1
41 142.81 precipitation 0.1 43200 > th dose dependent rect. 8 12
42 142.86 wind 1.0 43200 > th dose independent rect. 17 1
45 142.90 wind 1.0 43200 < th dose dependent rect. 3 4
51 143.32 precipitation 0.1 43200 > th dose independent rect. 8 12
53 143.35 precipitation 0.1 43200 < th dose independent rect. 8 12
54 143.35 precipitation 0.1 43200 < th dose dependent rect. 8 12
55 143.37 wind 1.0 43200 < th dose independent rect. 17 1
56 143.37 wind 1.0 43200 < th dose dependent rect. 5 2
57 143.40 precipitation 0.1 43200 > th dose independent rect. 8 10
58 143.41 precipitation 0.1 43200 < th dose independent rect. 8 10
59 143.41 precipitation 0.1 43200 < th dose dependent rect. 8 10
61 143.42 precipitation 0.1 43200 > th dose dependent rect. 8 21
63 143.46 precipitation 0.1 43200 > th dose dependent rect. 19 10
69 143.56 wind 1.0 43200 < th dose independent rect. 16 7
70 143.59 wind 1.0 43200 > th dose independent rect. 16 7
74 143.62 precipitation 0.1 43200 > th dose dependent rect. 12 2
77 143.64 wind 1.0 43200 < th dose dependent rect. 1 7
83 143.73 wind 1.0 43200 < th dose dependent rect. 23 9
88 143.84 wind 1.0 43200 < th dose dependent rect. 15 7
95 143.88 wind 1.0 43200 > th dose independent rect. 15 9
96 143.88 precipitation 0.1 43200 < th dose independent rect. 8 22
97 143.88 precipitation 0.1 43200 < th dose dependent rect. 8 22
98 143.89 precipitation 0.1 43200 > th dose independent rect. 8 22
100 143.91 precipitation 0.1 43200 < th dose independent rect. 19 5
101 143.91 precipitation 0.1 43200 > th dose dependent rect. 19 5
102 143.91 precipitation 0.1 43200 < th dose dependent rect. 19 5
104 143.94 precipitation 0.1 43200 < th dose independent rect. 13 17
105 143.94 precipitation 0.1 43200 < th dose dependent rect. 13 17
106 143.98 precipitation 0.1 43200 > th dose independent rect. 13 17
109 143.98 precipitation 0.1 43200 > th dose dependent rect. 8 16
113 144.01 precipitation 0.1 43200 > th dose independent rect. 19 5
117 144.06 precipitation 0.1 43200 > th dose dependent rect. 12 18
126 144.14 radiation 10.0 43200 < th dose dependent rect. 10 1
138 144.20 wind 1.0 43200 > th dose independent rect. 3 6
159 144.24 precipitation 0.1 43200 < th dose independent rect. 19 10
162 144.24 precipitation 0.1 43200 < th dose dependent rect. 19 10
165 144.26 precipitation 0.1 43200 > th dose independent rect. 19 10
173 144.28 precipitation 0.1 43200 < th dose independent rect. 12 6
175 144.28 precipitation 0.1 43200 > th dose dependent sin 22 NA
176 144.28 precipitation 0.1 43200 < th dose dependent rect. 12 6
177 144.29 wind 1.0 43200 > th dose independent rect. 3 4
201 144.36 precipitation 0.1 43200 < th dose independent rect. 8 16
202 144.36 precipitation 0.1 43200 < th dose dependent rect. 8 16
203 144.37 precipitation 0.1 43200 > th dose independent rect. 12 6
204 144.37 wind 1.0 43200 < th dose independent rect. 23 8
205 144.37 precipitation 0.1 43200 > th dose independent rect. 8 16
233 144.51 precipitation 0.1 43200 < th dose independent sin 21 NA
234 144.51 precipitation 0.1 43200 < th dose dependent sin 21 NA
235 144.52 precipitation 0.1 43200 > th dose independent sin 21 NA
269 144.61 precipitation 0.1 43200 < th dose independent rect. 12 8
270 144.61 precipitation 0.1 43200 < th dose dependent rect. 12 8
274 144.64 precipitation 0.1 43200 > th dose dependent rect. 19 8
277 144.65 precipitation 0.1 43200 > th dose independent rect. 12 8
301 144.72 wind 1.0 43200 < th dose dependent rect. 13 10
333 144.81 wind 1.0 43200 < th dose independent rect. 3 3
340 144.83 precipitation 0.1 43200 < th dose independent rect. 12 2
342 144.83 precipitation 0.1 43200 < th dose dependent rect. 12 2
366 144.87 precipitation 0.1 43200 > th dose dependent rect. 13 4
369 144.88 precipitation 0.1 43200 < th dose independent rect. 19 3
370 144.88 precipitation 0.1 43200 < th dose dependent rect. 19 3
395 144.96 precipitation 0.1 43200 > th dose independent rect. 19 3
401 144.99 precipitation 0.1 43200 > th dose independent rect. 9 1
402 144.99 precipitation 0.1 43200 > th dose dependent rect. 9 1
405 145.01 precipitation 0.1 43200 < th dose independent sin 14 NA
408 145.01 precipitation 0.1 43200 < th dose dependent sin 14 NA
417 145.04 precipitation 0.1 43200 > th dose independent sin 14 NA
423 145.07 wind 1.0 43200 < th dose independent rect. 3 6
434 145.10 precipitation 0.1 43200 > th dose dependent rect. 15 2
439 145.11 precipitation 0.1 43200 > th dose dependent sin 14 NA
469 145.17 precipitation 0.1 43200 > th dose dependent rect. 21 8
476 145.20 precipitation 0.1 43200 < th dose independent rect. 13 11
478 145.20 precipitation 0.1 43200 < th dose dependent rect. 13 11
493 145.23 precipitation 0.1 43200 > th dose independent rect. 12 2
506 145.26 precipitation 0.1 43200 > th dose independent rect. 13 11
509 145.27 wind 7.0 43200 > th dose independent rect. 21 17
513 145.30 precipitation 0.1 43200 > th dose independent rect. 15 2
543 145.39 precipitation 0.1 43200 < th dose independent rect. 15 2
546 145.39 precipitation 0.1 43200 < th dose dependent rect. 15 2
560 145.43 precipitation 0.1 43200 > th dose independent rect. 19 8
565 145.43 precipitation 0.1 43200 > th dose dependent rect. 12 13
569 145.44 wind 7.0 43200 < th dose independent rect. 21 17
598 145.49 precipitation 0.1 43200 < th dose independent rect. 9 1
599 145.49 precipitation 0.1 43200 < th dose dependent rect. 9 1
607 145.51 wind 1.0 43200 > th dose independent rect. 24 7
618 145.53 wind 7.0 43200 > th dose dependent rect. 21 17
667 145.68 radiation 40.0 4320 < th dose dependent rect. 7 1
706 145.76 radiation 10.0 4320 > th dose independent rect. 5 3
748 145.81 wind 1.0 43200 < th dose independent rect. 20 11
783 145.86 radiation 1.0 4320 > th dose dependent rect. 7 1
870 146.01 precipitation 0.1 43200 > th dose independent rect. 22 3
874 146.01 precipitation 0.1 43200 > th dose dependent rect. 22 3
890 146.06 precipitation 0.1 43200 < th dose independent rect. 22 3
891 146.06 precipitation 0.1 43200 < th dose dependent rect. 22 3
940 146.17 wind 7.0 43200 < th dose independent rect. 1 13
962 146.21 temperature 20.0 43200 > th dose independent rect. 17 2
970 146.23 wind 1.0 43200 > th dose dependent rect. 10 1
971 146.23 wind 9.0 43200 < th dose dependent rect. 10 1