Os02g0142800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF1677, Oryza sativa family protein.
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Os02g0142800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF1677, Oryza sativa family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 58.72 | 0.36 | 8.5 | -0.342 | 0.0983 | -0.266 | -1.38 | 4.51 | -0.113 | 18.2 | 26.21 | 745 | -- | -- |
| 59.79 | 0.363 | 8.59 | -1.02 | 0.0208 | 0.397 | 1.03 | -- | -0.297 | 5.57 | 24.01 | 18 | -- | -- |
| 61.67 | 0.366 | 8.48 | -0.2 | 0.141 | -0.326 | -- | 4.47 | -0.104 | 15.4 | 27.18 | 967 | -- | -- |
| 61.96 | 0.369 | 8.6 | -1.04 | 0.0384 | 0.411 | -- | -- | -0.321 | 0.73 | 21.08 | 7 | -- | -- |
| 62.72 | 0.369 | 8.5 | -0.328 | -- | -0.274 | -- | 3.9 | -0.135 | -- | 27.3 | 972 | -- | -- |
| 62.9 | 0.372 | 8.58 | -0.957 | 0.108 | -- | -0.871 | -- | -0.25 | 17.3 | -- | -- | -- | -- |
| 64.51 | 0.376 | 8.58 | -0.955 | 0.12 | -- | -- | -- | -0.254 | 15 | -- | -- | -- | -- |
| 62.03 | 0.367 | 8.6 | -1.03 | -- | 0.375 | -- | -- | -0.317 | -- | 20.8 | 7 | -- | -- |
| 88.3 | 0.438 | 8.56 | -- | 0.132 | -0.091 | -- | -- | -0.139 | 15.4 | 24.02 | 2328 | -- | -- |
| 65.34 | 0.378 | 8.59 | -0.96 | -- | -- | -- | -- | -0.257 | -- | -- | -- | -- | -- |
| 88.53 | 0.44 | 8.56 | -- | 0.139 | -- | -- | -- | -0.147 | 15 | -- | -- | -- | -- |
| 76.14 | 0.406 | 8.52 | -- | -- | -0.585 | -- | -- | 0.028 | -- | 12.3 | 47520 | -- | -- |
| 89.64 | 0.442 | 8.56 | -- | -- | -- | -- | -- | -0.15 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 55.37 | temperature | 20 | 270 | > th | dose independent | rect. | 4 | 9 |
| 2 | 55.37 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 10 |
| 7 | 55.64 | temperature | 30 | 10 | < th | dose dependent | rect. | 24 | 12 |
| 28 | 56.14 | temperature | 20 | 10 | > th | dose dependent | sin | 5 | NA |
| 38 | 56.22 | temperature | 30 | 10 | < th | dose dependent | sin | 4 | NA |
| 54 | 56.40 | temperature | 15 | 30 | > th | dose dependent | rect. | 6 | 8 |
| 81 | 56.62 | temperature | 15 | 270 | > th | dose dependent | rect. | 3 | 9 |
| 82 | 56.62 | temperature | 15 | 10 | > th | dose dependent | rect. | 6 | 10 |
| 92 | 56.67 | temperature | 20 | 270 | < th | dose independent | rect. | 3 | 7 |
| 100 | 56.69 | temperature | 30 | 30 | < th | dose dependent | rect. | 24 | 17 |
| 125 | 56.82 | temperature | 30 | 10 | < th | dose dependent | rect. | 24 | 21 |
| 192 | 57.09 | temperature | 20 | 30 | > th | dose dependent | rect. | 3 | 11 |
| 220 | 57.18 | temperature | 20 | 30 | > th | dose independent | rect. | 6 | 8 |
| 246 | 57.24 | temperature | 30 | 10 | < th | dose dependent | rect. | 24 | 23 |
| 260 | 57.28 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 15 |
| 295 | 57.36 | temperature | 20 | 270 | > th | dose independent | sin | 4 | NA |
| 304 | 57.38 | temperature | 25 | 30 | < th | dose independent | sin | 5 | NA |
| 310 | 57.40 | temperature | 25 | 30 | > th | dose independent | sin | 5 | NA |
| 317 | 57.42 | temperature | 20 | 270 | < th | dose independent | sin | 4 | NA |
| 322 | 57.42 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 13 |
| 346 | 57.48 | temperature | 25 | 30 | < th | dose independent | rect. | 24 | 12 |
| 444 | 57.65 | temperature | 30 | 720 | > th | dose independent | rect. | 13 | 1 |
| 446 | 57.65 | temperature | 20 | 270 | > th | dose dependent | rect. | 4 | 5 |
| 503 | 57.78 | humidity | 90 | 30 | < th | dose independent | rect. | 4 | 10 |
| 504 | 57.78 | temperature | 25 | 30 | > th | dose independent | rect. | 23 | 15 |
| 511 | 57.79 | wind | 1 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 522 | 57.81 | wind | 1 | 14400 | < th | dose dependent | rect. | 9 | 3 |
| 551 | 57.86 | wind | 1 | 14400 | > th | dose independent | rect. | 11 | 1 |
| 553 | 57.86 | atmosphere | 1005 | 90 | > th | dose dependent | rect. | 14 | 7 |
| 554 | 57.86 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 10 |
| 557 | 57.86 | temperature | 15 | 10 | > th | dose dependent | rect. | 6 | 20 |
| 560 | 57.87 | temperature | 10 | 270 | > th | dose dependent | rect. | 4 | 20 |
| 572 | 57.92 | temperature | 25 | 30 | > th | dose independent | rect. | 23 | 12 |
| 591 | 57.95 | temperature | 25 | 30 | > th | dose independent | rect. | 1 | 13 |
| 614 | 58.00 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 12 |
| 625 | 58.03 | temperature | 25 | 30 | > th | dose independent | rect. | 23 | 17 |
| 702 | 58.13 | temperature | 25 | 30 | > th | dose dependent | rect. | 23 | 10 |
| 771 | 58.22 | atmosphere | 1000 | 30 | > th | dose independent | rect. | 9 | 23 |
| 801 | 58.26 | temperature | 20 | 270 | > th | dose dependent | rect. | 6 | 1 |
| 810 | 58.28 | temperature | 25 | 10 | > th | dose independent | rect. | 6 | 5 |
| 811 | 58.28 | temperature | 25 | 30 | > th | dose independent | rect. | 1 | 10 |
| 828 | 58.30 | humidity | 50 | 4320 | > th | dose independent | rect. | 9 | 1 |
| 842 | 58.31 | wind | 9 | 4320 | > th | dose dependent | rect. | 13 | 1 |
| 850 | 58.32 | temperature | 25 | 270 | > th | dose dependent | sin | 13 | NA |
| 910 | 58.39 | humidity | 90 | 30 | > th | dose independent | sin | 3 | NA |
| 921 | 58.40 | humidity | 90 | 30 | < th | dose independent | sin | 3 | NA |
| 923 | 58.40 | wind | 3 | 14400 | > th | dose independent | rect. | 1 | 16 |
| 947 | 58.42 | temperature | 20 | 10 | > th | dose dependent | rect. | 16 | 14 |
| 963 | 58.44 | radiation | 10 | 1440 | > th | dose independent | rect. | 10 | 7 |
| 992 | 58.46 | wind | 3 | 14400 | < th | dose independent | rect. | 1 | 16 |
| 996 | 58.46 | wind | 3 | 4320 | > th | dose dependent | rect. | 13 | 1 |
| 997 | 58.46 | wind | 9 | 14400 | > th | dose dependent | rect. | 9 | 5 |