Os02g0142500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os02g0142500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 64.5 | 0.377 | 9.82 | 1.16 | 1.6 | 0.794 | 0.688 | 1.14 | 0.134 | 17.8 | 39.5 | 73 | -- | -- |
| 66.6 | 0.38 | 9.81 | 1.2 | 1.61 | 0.708 | 0.751 | -- | 0.138 | 17.8 | 37.62 | 72 | -- | -- |
| 65.64 | 0.377 | 9.81 | 1.16 | 1.61 | 0.783 | -- | 1.16 | 0.137 | 17.8 | 39.5 | 71 | -- | -- |
| 67.7 | 0.383 | 9.82 | 1.17 | 1.61 | 0.762 | -- | -- | 0.134 | 17.8 | 40.02 | 69 | -- | -- |
| 95.15 | 0.454 | 9.91 | 1.19 | -- | 2 | -- | -0.179 | 0.202 | -- | 0.4106 | 656 | -- | -- |
| 75.8 | 0.408 | 9.8 | 1.14 | 1.66 | -- | 0.65 | -- | 0.168 | 17.2 | -- | -- | -- | -- |
| 76.86 | 0.411 | 9.8 | 1.14 | 1.67 | -- | -- | -- | 0.171 | 17.2 | -- | -- | -- | -- |
| 84.8 | 0.429 | 9.82 | 0.938 | -- | 1.79 | -- | -- | 0.115 | -- | 1.36 | 658 | -- | -- |
| 103.61 | 0.474 | 9.82 | -- | 1.57 | 0.785 | -- | -- | 0.116 | 17.8 | 40.04 | 70 | -- | -- |
| 221.84 | 0.696 | 9.78 | 1.08 | -- | -- | -- | -- | 0.129 | -- | -- | -- | -- | -- |
| 111.15 | 0.493 | 9.83 | -- | 1.65 | -- | -- | -- | 0.044 | 17.3 | -- | -- | -- | -- |
| 105.12 | 0.478 | 9.81 | -- | -- | 1.91 | -- | -- | -0.0159 | -- | 3.061e-06 | 665 | -- | -- |
| 252.75 | 0.742 | 9.8 | -- | -- | -- | -- | -- | 0.00912 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 51.78 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 8 | 7 |
| 25 | 55.10 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 8 | 3 |
| 32 | 55.33 | wind | 5.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 37 | 55.44 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 47 | 55.81 | wind | 5.0 | 270 | < th | dose independent | rect. | 4 | 1 |
| 63 | 56.25 | wind | 5.0 | 270 | < th | dose independent | rect. | 2 | 5 |
| 64 | 56.26 | wind | 9.0 | 270 | < th | dose independent | rect. | 6 | 21 |
| 67 | 56.37 | wind | 9.0 | 270 | < th | dose independent | rect. | 5 | 23 |
| 74 | 56.44 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 3 |
| 75 | 56.44 | wind | 7.0 | 90 | < th | dose independent | rect. | 8 | 20 |
| 76 | 56.44 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 3 |
| 97 | 57.00 | temperature | 10.0 | 270 | > th | dose independent | rect. | 3 | 3 |
| 99 | 57.00 | temperature | 30.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 100 | 57.00 | humidity | 50.0 | 270 | > th | dose independent | rect. | 3 | 3 |
| 103 | 57.00 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 3 | 3 |
| 104 | 57.00 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 105 | 57.00 | radiation | 20.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 109 | 57.00 | temperature | 10.0 | 270 | > th | dose independent | rect. | 6 | 21 |
| 114 | 57.08 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 4 | 1 |
| 115 | 57.08 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 4 | 1 |
| 116 | 57.08 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 3 | 3 |
| 117 | 57.08 | radiation | 20.0 | 270 | < th | dose dependent | rect. | 3 | 4 |
| 123 | 57.18 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 4 | 1 |
| 124 | 57.18 | atmosphere | 1000.0 | 90 | > th | dose dependent | rect. | 4 | 4 |
| 135 | 57.30 | temperature | 20.0 | 90 | > th | dose independent | rect. | 8 | 7 |
| 145 | 57.33 | temperature | 10.0 | 90 | > th | dose independent | rect. | 8 | 20 |
| 146 | 57.33 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 8 | 19 |
| 148 | 57.36 | temperature | 10.0 | 270 | > th | dose independent | rect. | 4 | 1 |
| 150 | 57.36 | temperature | 30.0 | 270 | < th | dose independent | rect. | 4 | 1 |
| 151 | 57.36 | humidity | 50.0 | 270 | > th | dose independent | rect. | 4 | 1 |
| 154 | 57.36 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 4 | 1 |
| 155 | 57.36 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 4 | 1 |
| 157 | 57.36 | radiation | 20.0 | 270 | < th | dose independent | rect. | 4 | 1 |
| 160 | 57.36 | temperature | 10.0 | 270 | > th | dose independent | rect. | 5 | 23 |
| 165 | 57.38 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 4 | 1 |
| 167 | 57.38 | radiation | 20.0 | 270 | < th | dose dependent | rect. | 2 | 7 |
| 178 | 57.46 | radiation | 1.0 | 270 | < th | dose independent | rect. | 4 | 1 |
| 181 | 57.46 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 6 | 21 |
| 182 | 57.46 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 6 | 21 |
| 186 | 57.49 | wind | 9.0 | 270 | < th | dose dependent | rect. | 3 | 3 |
| 189 | 57.51 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 4 | 4 |
| 194 | 57.55 | humidity | 90.0 | 90 | < th | dose independent | rect. | 8 | 7 |
| 198 | 57.59 | wind | 9.0 | 10 | < th | dose independent | rect. | 9 | 19 |
| 210 | 57.69 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 8 | 20 |
| 211 | 57.69 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 8 | 20 |
| 214 | 57.73 | wind | 7.0 | 90 | < th | dose independent | rect. | 8 | 7 |
| 216 | 57.74 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 9 | 19 |
| 226 | 57.83 | wind | 9.0 | 270 | < th | dose dependent | rect. | 4 | 1 |
| 237 | 57.92 | atmosphere | 1000.0 | 270 | > th | dose dependent | rect. | 4 | 1 |
| 255 | 57.98 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 8 | 7 |
| 256 | 57.98 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 8 | 7 |
| 274 | 58.07 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 4 | 5 |
| 277 | 58.07 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 4 | 5 |
| 286 | 58.13 | temperature | 15.0 | 90 | > th | dose independent | rect. | 15 | 17 |
| 296 | 58.17 | temperature | 10.0 | 10 | > th | dose independent | rect. | 4 | 5 |
| 298 | 58.17 | temperature | 30.0 | 10 | < th | dose independent | rect. | 4 | 5 |
| 299 | 58.17 | humidity | 50.0 | 10 | > th | dose independent | rect. | 4 | 5 |
| 301 | 58.17 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 4 | 5 |
| 302 | 58.17 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 4 | 5 |
| 303 | 58.17 | temperature | 10.0 | 10 | > th | dose independent | rect. | 9 | 19 |
| 318 | 58.22 | wind | 1.0 | 270 | > th | dose independent | rect. | 3 | 3 |
| 321 | 58.22 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 8 | 7 |
| 324 | 58.24 | radiation | 10.0 | 270 | < th | dose independent | rect. | 2 | 6 |
| 352 | 58.36 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 8 | 7 |
| 353 | 58.36 | radiation | 40.0 | 90 | < th | dose independent | rect. | 15 | 17 |
| 371 | 58.40 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 8 | 20 |
| 375 | 58.42 | wind | 1.0 | 90 | > th | dose independent | rect. | 8 | 7 |
| 391 | 58.50 | radiation | 1.0 | 270 | < th | dose independent | rect. | 3 | 8 |
| 420 | 58.57 | radiation | 1.0 | 90 | > th | dose independent | rect. | 8 | 7 |
| 435 | 58.64 | wind | 1.0 | 270 | > th | dose independent | rect. | 2 | 5 |
| 441 | 58.66 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 15 | 17 |
| 442 | 58.66 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 15 | 17 |
| 444 | 58.67 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 4 | 1 |
| 451 | 58.71 | wind | 9.0 | 90 | < th | dose independent | rect. | 15 | 17 |
| 461 | 58.79 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 4 | 1 |
| 463 | 58.79 | wind | 9.0 | 270 | < th | dose dependent | rect. | 7 | 7 |
| 485 | 58.86 | temperature | 25.0 | 10 | > th | dose independent | rect. | 9 | 6 |
| 491 | 58.88 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 15 | 17 |
| 496 | 58.91 | radiation | 1.0 | 90 | > th | dose independent | rect. | 18 | 14 |
| 497 | 58.93 | wind | 9.0 | 270 | < th | dose dependent | rect. | 7 | 19 |
| 508 | 59.00 | radiation | 40.0 | 90 | < th | dose independent | rect. | 4 | 15 |
| 510 | 59.01 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 3 | 3 |
| 520 | 59.05 | wind | 9.0 | 10 | < th | dose dependent | rect. | 4 | 5 |
| 529 | 59.10 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 9 | 19 |
| 565 | 59.18 | radiation | 1.0 | 90 | > th | dose independent | rect. | 4 | 4 |
| 580 | 59.19 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 15 | 17 |
| 582 | 59.20 | radiation | 40.0 | 90 | < th | dose independent | rect. | 4 | 17 |
| 659 | 59.48 | radiation | 40.0 | 90 | < th | dose independent | rect. | 13 | 19 |
| 663 | 59.52 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 6 | 21 |
| 669 | 59.54 | radiation | 40.0 | 270 | < th | dose independent | rect. | 11 | 20 |
| 728 | 59.68 | wind | 9.0 | 1440 | < th | dose independent | rect. | 5 | 4 |
| 729 | 59.68 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 5 | 4 |
| 732 | 59.68 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 5 | 4 |
| 734 | 59.68 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 5 | 4 |
| 735 | 59.68 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 5 | 4 |
| 738 | 59.68 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 9 | 20 |
| 778 | 59.75 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 2 | 15 |
| 816 | 59.87 | atmosphere | 1005.0 | 90 | > th | dose independent | rect. | 4 | 4 |
| 824 | 59.93 | temperature | 25.0 | 270 | > th | dose independent | rect. | 8 | 3 |
| 829 | 59.94 | radiation | 1.0 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 831 | 59.94 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 18 | 9 |
| 837 | 59.96 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 15 |
| 841 | 59.96 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 15 |
| 842 | 59.97 | wind | 9.0 | 270 | < th | dose independent | rect. | 18 | 9 |
| 843 | 59.97 | radiation | 10.0 | 270 | < th | dose independent | rect. | 18 | 9 |
| 855 | 59.99 | temperature | 10.0 | 270 | > th | dose independent | rect. | 18 | 9 |
| 856 | 59.99 | humidity | 50.0 | 270 | > th | dose independent | rect. | 18 | 9 |
| 861 | 59.99 | temperature | 10.0 | 270 | > th | dose independent | rect. | 3 | 15 |
| 862 | 59.99 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 3 | 15 |
| 870 | 60.02 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 18 | 9 |
| 892 | 60.07 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 4 | 1 |
| 917 | 60.11 | humidity | 70.0 | 90 | > th | dose independent | rect. | 3 | 8 |
| 926 | 60.14 | radiation | 10.0 | 270 | > th | dose independent | rect. | 8 | 3 |
| 946 | 60.18 | radiation | 40.0 | 270 | < th | dose independent | rect. | 2 | 15 |