Os02g0141300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Galactokinase family protein.
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Os02g0141300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Galactokinase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 78.82 | 0.417 | 8.89 | -0.0467 | 0.251 | -0.937 | 0.331 | 2.08 | 0.436 | 23.1 | -1.14 | 62 | -- | -- |
| 83.3 | 0.428 | 8.9 | -0.0249 | 0.276 | -0.911 | -0.971 | -- | 0.4 | 0.556 | -1.14 | 62 | -- | -- |
| 79.02 | 0.414 | 8.89 | -0.0342 | 0.247 | -0.957 | -- | 1.79 | 0.451 | 23.3 | -2.129 | 58 | -- | -- |
| 85.49 | 0.431 | 8.89 | -0.00548 | 0.199 | -1.04 | -- | -- | 0.441 | 23 | -7.155 | 58 | -- | -- |
| 80.42 | 0.418 | 8.87 | -0.00405 | -- | -1.19 | -- | 1.79 | 0.47 | -- | -5.664e-06 | 49 | -- | -- |
| 94.56 | 0.456 | 8.9 | -0.0405 | 0.77 | -- | -0.885 | -- | 0.403 | 0.213 | -- | -- | -- | -- |
| 97.93 | 0.463 | 8.9 | -0.00523 | 0.773 | -- | -- | -- | 0.408 | 0.112 | -- | -- | -- | -- |
| 86.47 | 0.433 | 8.88 | -0.00616 | -- | -1.25 | -- | -- | 0.443 | -- | -2.83 | 48 | -- | -- |
| 85.49 | 0.431 | 8.89 | -- | 0.199 | -1.04 | -- | -- | 0.442 | 23 | -7.09 | 58 | -- | -- |
| 135.53 | 0.544 | 8.89 | 0.0194 | -- | -- | -- | -- | 0.419 | -- | -- | -- | -- | -- |
| 97.93 | 0.463 | 8.9 | -- | 0.773 | -- | -- | -- | 0.408 | 0.112 | -- | -- | -- | -- |
| 86.44 | 0.433 | 8.88 | -- | -- | -1.25 | -- | -- | 0.444 | -- | -3.768 | 49 | -- | -- |
| 135.54 | 0.543 | 8.89 | -- | -- | -- | -- | -- | 0.417 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 77.62 | radiation | 40 | 90 | < th | dose dependent | rect. | 12 | 23 |
| 2 | 77.89 | radiation | 20 | 90 | < th | dose dependent | sin | 0 | NA |
| 3 | 77.97 | humidity | 50 | 10 | > th | dose dependent | rect. | 6 | 14 |
| 4 | 78.10 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 20 |
| 12 | 78.48 | radiation | 40 | 270 | < th | dose dependent | rect. | 11 | 21 |
| 19 | 78.87 | radiation | 10 | 90 | > th | dose independent | sin | 23 | NA |
| 21 | 78.88 | temperature | 25 | 270 | < th | dose independent | rect. | 12 | 19 |
| 24 | 79.06 | radiation | 1 | 10 | > th | dose dependent | rect. | 9 | 10 |
| 36 | 79.13 | radiation | 1 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 70 | 79.26 | radiation | 1 | 90 | > th | dose dependent | rect. | 7 | 11 |
| 73 | 79.29 | radiation | 40 | 270 | < th | dose independent | rect. | 10 | 22 |
| 85 | 79.29 | radiation | 1 | 10 | > th | dose dependent | rect. | 11 | 23 |
| 105 | 79.40 | radiation | 40 | 30 | < th | dose dependent | rect. | 23 | 23 |
| 106 | 79.41 | temperature | 10 | 270 | > th | dose dependent | rect. | 19 | 8 |
| 122 | 79.46 | radiation | 1 | 10 | > th | dose dependent | sin | 23 | NA |
| 126 | 79.50 | radiation | 1 | 90 | > th | dose dependent | rect. | 13 | 23 |
| 127 | 79.51 | radiation | 1 | 90 | > th | dose dependent | rect. | 15 | 23 |
| 131 | 79.53 | radiation | 1 | 90 | > th | dose dependent | sin | 0 | NA |
| 137 | 79.54 | radiation | 20 | 90 | < th | dose dependent | rect. | 6 | 14 |
| 164 | 79.58 | radiation | 10 | 90 | > th | dose independent | rect. | 9 | 9 |
| 188 | 79.65 | radiation | 10 | 90 | > th | dose independent | rect. | 9 | 23 |
| 199 | 79.67 | radiation | 20 | 270 | < th | dose independent | rect. | 11 | 21 |
| 227 | 79.84 | humidity | 90 | 10 | < th | dose dependent | sin | 0 | NA |
| 245 | 79.86 | radiation | 1 | 270 | < th | dose independent | rect. | 5 | 13 |
| 273 | 79.91 | humidity | 80 | 90 | < th | dose dependent | sin | 2 | NA |
| 274 | 79.91 | humidity | 90 | 10 | < th | dose dependent | rect. | 9 | 10 |
| 276 | 79.92 | radiation | 1 | 90 | > th | dose dependent | no | NA | NA |
| 348 | 80.03 | radiation | 1 | 270 | < th | dose dependent | rect. | 5 | 13 |
| 362 | 80.05 | radiation | 40 | 10 | < th | dose dependent | rect. | 6 | 14 |
| 376 | 80.07 | radiation | 1 | 10 | > th | dose dependent | no | NA | NA |
| 451 | 80.11 | humidity | 80 | 10 | > th | dose independent | rect. | 6 | 14 |
| 455 | 80.12 | radiation | 40 | 270 | < th | dose dependent | rect. | 2 | 15 |
| 463 | 80.15 | radiation | 40 | 10 | < th | dose dependent | rect. | 12 | 23 |
| 475 | 80.20 | radiation | 30 | 90 | < th | dose dependent | no | NA | NA |
| 476 | 80.20 | radiation | 10 | 270 | < th | dose dependent | rect. | 3 | 15 |
| 529 | 80.31 | humidity | 90 | 90 | < th | dose dependent | rect. | 7 | 10 |
| 537 | 80.34 | radiation | 1 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 545 | 80.39 | humidity | 50 | 10 | > th | dose dependent | sin | 23 | NA |
| 612 | 80.42 | radiation | 40 | 90 | < th | dose independent | rect. | 12 | 23 |
| 662 | 80.52 | radiation | 40 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 670 | 80.55 | humidity | 80 | 270 | > th | dose independent | rect. | 3 | 16 |
| 685 | 80.60 | radiation | 1 | 30 | > th | dose dependent | rect. | 11 | 1 |
| 717 | 80.65 | humidity | 70 | 270 | > th | dose independent | rect. | 1 | 16 |
| 764 | 80.78 | humidity | 80 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 787 | 80.84 | radiation | 1 | 270 | < th | dose independent | rect. | 11 | 7 |
| 789 | 80.84 | radiation | 1 | 10 | > th | dose dependent | rect. | 9 | 3 |
| 802 | 80.86 | humidity | 50 | 90 | > th | dose dependent | rect. | 3 | 17 |
| 805 | 80.87 | humidity | 60 | 90 | > th | dose independent | rect. | 12 | 23 |
| 829 | 80.91 | humidity | 80 | 10 | < th | dose dependent | rect. | 11 | 7 |
| 835 | 80.92 | humidity | 80 | 10 | < th | dose dependent | rect. | 1 | 17 |
| 838 | 80.92 | radiation | 40 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 853 | 80.96 | radiation | 40 | 90 | < th | dose independent | rect. | 3 | 17 |
| 856 | 80.97 | radiation | 10 | 90 | < th | dose dependent | rect. | 6 | 11 |
| 886 | 81.00 | humidity | 70 | 30 | > th | dose independent | rect. | 3 | 17 |
| 935 | 81.05 | radiation | 40 | 10 | < th | dose dependent | rect. | 6 | 16 |
| 947 | 81.08 | temperature | 25 | 270 | < th | dose independent | rect. | 8 | 3 |
| 953 | 81.08 | radiation | 30 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 980 | 81.11 | humidity | 80 | 270 | < th | dose dependent | rect. | 11 | 1 |
| 984 | 81.12 | radiation | 1 | 30 | > th | dose dependent | rect. | 11 | 7 |