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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0140800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.23 (0.0535) R2 : 0.618
β1 : 4.38 (0.208) R2dD : 0.454 R2D : 0.148
β2 : 2.25 (0.137) R2dC : 0.227 R2C : 0.167
β3 : 2.29 (0.188) R2dE : 0.163 R2E : -0.131
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 1.49 (0.122) R2dN8 : 0.2 R2N8 : -0.0539
σ : 0.98
deviance : 442.48
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_____
C
peak time of C : 18.6
E
wheather : temperature
threshold : 20.3
memory length : 1705
response mode : < th
dose dependency : dose independent
G
type of G : sin
peak or start time of G : 5.71
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
443.15 0.989 5.22 4.34 2.23 2.15 -0.915 -0.0918 1.5 18.7 20.35 1585 2.31 --
440.89 0.978 5.23 4.36 2.25 2.26 -0.776 -- 1.49 18.6 20.2 1705 5.51 --
441.5 0.979 5.21 4.5 2.24 2.25 -- -0.545 1.53 18.5 20.29 1705 5.83 --
442.48 0.98 5.23 4.38 2.25 2.29 -- -- 1.49 18.6 20.3 1705 5.71 --
694.41 1.23 5.16 4.58 -- 2.34 -- -0.756 1.5 -- 20 1612 6.5 --
583.97 1.13 5.36 3.37 2.23 -- -1.24 -- 0.91 18.7 -- -- -- --
587.7 1.14 5.36 3.39 2.22 -- -- -- 0.908 18.7 -- -- -- --
695.8 1.23 5.18 4.41 -- 2.4 -- -- 1.45 -- 19.91 1611 6.54 --
827.9 1.35 5.4 -- 2.21 1.52 -- -- 0.71 18.1 20.3 1705 5.71 --
845.63 1.36 5.32 3.34 -- -- -- -- 0.863 -- -- -- -- --
890.4 1.4 5.45 -- 2.18 -- -- -- 0.53 18.7 -- -- -- --
1054.87 1.52 5.34 -- -- 1.45 -- -- 0.743 -- 22.3 1658 8.77 --
1139.29 1.58 5.4 -- -- -- -- -- 0.493 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 436.38 temperature 20.0 1440 > th dose independent rect. 5 2
2 437.10 temperature 20.0 1440 < th dose independent rect. 5 2
3 437.54 precipitation 0.1 43200 > th dose independent rect. 2 6
4 437.54 precipitation 0.1 43200 < th dose independent rect. 2 6
5 437.54 precipitation 0.1 43200 < th dose dependent rect. 2 6
6 438.35 precipitation 0.1 43200 > th dose dependent rect. 2 6
11 439.15 humidity 60.0 14400 > th dose dependent rect. 5 2
34 441.87 wind 3.0 43200 < th dose dependent rect. 22 1
45 442.15 radiation 40.0 4320 < th dose dependent rect. 17 1
50 442.30 temperature 20.0 1440 > th dose independent rect. 2 6
51 442.32 temperature 20.0 1440 < th dose independent rect. 2 6
55 442.62 temperature 20.0 1440 < th dose independent rect. 23 9
58 442.77 wind 1.0 14400 < th dose dependent rect. 23 3
72 443.26 precipitation 0.1 43200 > th dose independent rect. 23 9
73 443.35 temperature 20.0 1440 > th dose independent rect. 23 9
77 443.46 precipitation 0.1 43200 < th dose independent rect. 23 9
78 443.46 precipitation 0.1 43200 < th dose dependent rect. 23 9
81 443.63 precipitation 0.1 43200 < th dose independent rect. 6 2
82 443.63 precipitation 0.1 43200 < th dose dependent rect. 6 2
95 443.92 precipitation 0.1 43200 > th dose dependent rect. 6 2
97 444.15 precipitation 0.1 43200 > th dose independent rect. 6 2
112 445.02 radiation 1.0 4320 > th dose dependent rect. 17 1
120 445.34 temperature 20.0 1440 > th dose independent rect. 3 1
150 446.53 temperature 20.0 1440 < th dose independent rect. 3 1
156 446.86 humidity 50.0 14400 > th dose dependent rect. 23 8
237 449.11 radiation 40.0 4320 < th dose dependent rect. 17 3
245 449.26 radiation 40.0 4320 < th dose dependent rect. 17 5
263 449.66 wind 1.0 14400 < th dose dependent rect. 20 6
264 449.70 radiation 40.0 4320 < th dose dependent rect. 17 7
283 450.36 humidity 50.0 14400 > th dose dependent rect. 24 1
290 450.66 humidity 90.0 43200 > th dose independent rect. 6 1
292 450.68 humidity 80.0 43200 < th dose independent rect. 18 1
300 450.85 humidity 50.0 14400 > th dose dependent rect. 23 4
306 450.93 humidity 80.0 43200 > th dose independent rect. 18 1
315 451.05 radiation 20.0 4320 < th dose dependent rect. 17 10
331 451.43 atmosphere 1015.0 43200 > th dose independent rect. 19 2
341 451.63 humidity 90.0 43200 < th dose independent rect. 6 1
350 451.88 atmosphere 1015.0 43200 > th dose dependent rect. 21 1
383 452.70 wind 1.0 14400 > th dose independent rect. 22 1
385 452.74 humidity 50.0 14400 > th dose dependent rect. 22 6
403 452.95 temperature 20.0 1440 < th dose independent sin 8 NA
430 453.27 temperature 20.0 1440 > th dose independent sin 7 NA
441 453.49 humidity 90.0 14400 < th dose dependent rect. 6 1
462 453.99 temperature 15.0 1440 > th dose dependent rect. 5 1
464 454.03 humidity 60.0 43200 < th dose independent rect. 20 13
467 454.08 atmosphere 1015.0 43200 < th dose independent rect. 23 1
487 454.38 atmosphere 1015.0 43200 > th dose independent rect. 15 9
488 454.38 temperature 30.0 1440 < th dose dependent rect. 5 1
501 454.62 atmosphere 1015.0 43200 > th dose independent rect. 23 1
515 454.91 wind 1.0 14400 < th dose independent rect. 22 4
557 455.76 humidity 60.0 43200 > th dose independent rect. 21 12
586 456.10 wind 1.0 14400 < th dose independent rect. 22 1
590 456.15 radiation 1.0 43200 < th dose independent rect. 18 12
600 456.32 temperature 20.0 1440 < th dose independent rect. 23 2
629 456.72 radiation 1.0 14400 > th dose independent rect. 6 1
639 456.80 radiation 1.0 43200 > th dose independent rect. 18 12
641 456.85 radiation 1.0 14400 < th dose independent rect. 6 1
649 456.95 atmosphere 1015.0 43200 < th dose independent rect. 15 9
657 457.03 radiation 1.0 14400 > th dose independent rect. 4 12
669 457.08 radiation 1.0 14400 < th dose independent rect. 24 16
670 457.10 radiation 1.0 14400 < th dose independent rect. 3 13
694 457.19 radiation 1.0 14400 < th dose independent rect. 19 21
716 457.58 temperature 15.0 1440 > th dose dependent rect. 3 3
731 457.70 atmosphere 1015.0 43200 > th dose dependent sin 14 NA
734 457.72 atmosphere 1015.0 43200 > th dose dependent rect. 14 16
755 457.87 atmosphere 1015.0 43200 > th dose dependent rect. 16 13
759 457.93 temperature 30.0 1440 < th dose dependent rect. 3 3
796 458.09 humidity 90.0 43200 > th dose dependent rect. 5 8
802 458.13 wind 7.0 43200 > th dose independent rect. 5 4
843 458.46 humidity 90.0 14400 < th dose independent rect. 23 1
895 458.74 wind 1.0 14400 < th dose dependent rect. 22 9
901 458.79 atmosphere 1015.0 43200 > th dose dependent rect. 10 14
927 458.97 atmosphere 1015.0 43200 < th dose independent rect. 16 5
963 459.15 radiation 1.0 14400 < th dose dependent rect. 5 2