Os02g0140400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Beta-amyrin synthase.
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Os02g0140400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Beta-amyrin synthase.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 204.39 | 0.672 | 2.91 | 0.0746 | 0.0795 | -0.262 | 0.0808 | 3.77 | 0.0239 | 11 | 48.68 | 312 | -- | -- |
| 204.79 | 0.666 | 2.92 | -0.00897 | 0.0696 | 1.02 | 0.146 | -- | 0.0266 | 11.9 | 47 | 353 | -- | -- |
| 204.41 | 0.666 | 2.91 | 0.081 | 0.0789 | -0.305 | -- | 3.87 | 0.0241 | 11.6 | 48.67 | 311 | -- | -- |
| 204.68 | 0.666 | 2.92 | 0.0101 | 0.0805 | 1.22 | -- | -- | 0.0254 | 11.5 | 47.33 | 311 | -- | -- |
| 204.8 | 0.667 | 2.91 | 0.0827 | -- | -0.373 | -- | 4.08 | 0.0227 | -- | 48.55 | 311 | -- | -- |
| 207.74 | 0.676 | 2.93 | 0.0687 | 0.0965 | -- | 0.126 | -- | 0.018 | 13 | -- | -- | -- | -- |
| 207.81 | 0.675 | 2.93 | 0.0733 | 0.0963 | -- | -- | -- | 0.0187 | 13 | -- | -- | -- | -- |
| 205.1 | 0.667 | 2.92 | 0.00626 | -- | 1.24 | -- | -- | 0.0243 | -- | 47.39 | 311 | -- | -- |
| 204.69 | 0.666 | 2.92 | -- | 0.0811 | 1.23 | -- | -- | 0.0246 | 11.4 | 47.41 | 311 | -- | -- |
| 208.39 | 0.675 | 2.93 | 0.0697 | -- | -- | -- | -- | 0.0168 | -- | -- | -- | -- | -- |
| 207.95 | 0.675 | 2.93 | -- | 0.0951 | -- | -- | -- | 0.0105 | 13 | -- | -- | -- | -- |
| 205.1 | 0.667 | 2.93 | -- | -- | 1.24 | -- | -- | 0.0236 | -- | 47.39 | 311 | -- | -- |
| 208.51 | 0.674 | 2.93 | -- | -- | -- | -- | -- | 0.00909 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 190.62 | temperature | 20 | 90 | < th | dose independent | rect. | 14 | 3 |
| 2 | 190.99 | temperature | 25 | 90 | < th | dose dependent | rect. | 14 | 1 |
| 3 | 191.24 | radiation | 1 | 90 | < th | dose independent | rect. | 14 | 1 |
| 4 | 191.24 | radiation | 1 | 90 | < th | dose dependent | rect. | 14 | 1 |
| 6 | 191.43 | temperature | 20 | 90 | < th | dose dependent | rect. | 12 | 4 |
| 7 | 191.46 | temperature | 20 | 30 | < th | dose dependent | rect. | 14 | 3 |
| 8 | 191.46 | temperature | 20 | 10 | < th | dose dependent | rect. | 12 | 5 |
| 44 | 192.16 | temperature | 20 | 90 | < th | dose independent | rect. | 12 | 5 |
| 49 | 192.43 | temperature | 20 | 10 | < th | dose dependent | rect. | 10 | 7 |
| 52 | 192.58 | radiation | 1 | 90 | < th | dose independent | rect. | 8 | 1 |
| 55 | 192.58 | radiation | 1 | 90 | < th | dose dependent | rect. | 8 | 1 |
| 80 | 194.07 | atmosphere | 1005 | 270 | > th | dose dependent | rect. | 12 | 4 |
| 98 | 195.06 | atmosphere | 1005 | 90 | > th | dose dependent | rect. | 14 | 2 |
| 135 | 195.72 | wind | 5 | 90 | > th | dose independent | rect. | 6 | 1 |
| 136 | 195.72 | wind | 5 | 90 | > th | dose dependent | rect. | 6 | 1 |
| 141 | 195.74 | radiation | 20 | 90 | > th | dose independent | rect. | 6 | 1 |
| 155 | 195.74 | radiation | 20 | 90 | > th | dose dependent | rect. | 6 | 1 |
| 205 | 196.45 | humidity | 50 | 90 | < th | dose dependent | rect. | 12 | 2 |
| 224 | 196.52 | humidity | 60 | 10 | > th | dose dependent | rect. | 14 | 3 |
| 228 | 196.56 | humidity | 50 | 30 | < th | dose independent | rect. | 12 | 3 |
| 316 | 196.89 | humidity | 50 | 10 | < th | dose dependent | rect. | 13 | 5 |
| 426 | 197.11 | atmosphere | 1005 | 90 | > th | dose independent | rect. | 15 | 1 |
| 427 | 197.11 | humidity | 50 | 10 | < th | dose independent | rect. | 13 | 5 |
| 445 | 197.12 | wind | 3 | 10 | > th | dose independent | rect. | 14 | 3 |
| 474 | 197.26 | atmosphere | 1005 | 10 | > th | dose independent | rect. | 15 | 1 |
| 502 | 197.44 | wind | 5 | 30 | > th | dose dependent | rect. | 1 | 7 |
| 509 | 197.51 | wind | 3 | 90 | > th | dose independent | rect. | 14 | 3 |
| 517 | 197.59 | atmosphere | 1005 | 10 | > th | dose independent | rect. | 14 | 3 |
| 586 | 197.91 | humidity | 50 | 30 | < th | dose dependent | sin | 7 | NA |
| 617 | 198.07 | temperature | 20 | 90 | < th | dose independent | rect. | 8 | 9 |
| 670 | 198.50 | wind | 5 | 30 | > th | dose independent | rect. | 1 | 7 |
| 683 | 198.56 | humidity | 70 | 90 | > th | dose independent | rect. | 14 | 1 |
| 693 | 198.63 | wind | 5 | 10 | > th | dose independent | rect. | 7 | 1 |
| 723 | 198.91 | humidity | 80 | 10 | > th | dose dependent | rect. | 16 | 1 |
| 731 | 198.97 | humidity | 70 | 90 | > th | dose independent | rect. | 14 | 3 |
| 738 | 199.01 | radiation | 20 | 30 | < th | dose dependent | rect. | 15 | 2 |
| 769 | 199.06 | atmosphere | 1000 | 10 | > th | dose dependent | rect. | 12 | 6 |
| 779 | 199.12 | temperature | 30 | 90 | < th | dose independent | rect. | 12 | 5 |
| 803 | 199.25 | humidity | 60 | 270 | > th | dose independent | rect. | 12 | 3 |
| 807 | 199.26 | radiation | 1 | 10 | < th | dose independent | rect. | 16 | 1 |
| 825 | 199.39 | humidity | 60 | 10 | > th | dose independent | rect. | 14 | 3 |
| 837 | 199.46 | humidity | 50 | 10 | < th | dose dependent | sin | 12 | NA |
| 878 | 199.61 | humidity | 50 | 10 | > th | dose independent | sin | 13 | NA |
| 886 | 199.66 | temperature | 20 | 10 | < th | dose independent | rect. | 12 | 6 |
| 887 | 199.67 | humidity | 50 | 10 | < th | dose independent | sin | 13 | NA |
| 889 | 199.68 | humidity | 90 | 30 | < th | dose independent | rect. | 14 | 3 |
| 924 | 199.86 | temperature | 30 | 270 | < th | dose independent | rect. | 12 | 1 |
| 943 | 199.97 | temperature | 30 | 10 | < th | dose independent | rect. | 14 | 3 |
| 945 | 199.97 | wind | 1 | 30 | > th | dose dependent | rect. | 14 | 3 |
| 976 | 200.08 | humidity | 50 | 90 | < th | dose independent | sin | 7 | NA |
| 979 | 200.09 | humidity | 50 | 10 | > th | dose dependent | rect. | 12 | 5 |