Os02g0139600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Dars-prov protein.
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Os02g0139600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Dars-prov protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 44.22 | 0.312 | 9.83 | 1.06 | 0.405 | -0.687 | -0.0956 | -0.872 | 0.32 | 22.2 | 20.3 | 1396 | -- | -- |
| 45.45 | 0.314 | 9.8 | 1.2 | 0.421 | -0.53 | -0.172 | -- | 0.356 | 22.1 | 20.7 | 1304 | -- | -- |
| 44.12 | 0.309 | 9.82 | 1.05 | 0.409 | -0.638 | -- | -0.786 | 0.325 | 22.3 | 20.6 | 1352 | -- | -- |
| 45.51 | 0.314 | 9.8 | 1.2 | 0.41 | -0.542 | -- | -- | 0.358 | 22.2 | 20.7 | 1350 | -- | -- |
| 53.94 | 0.342 | 9.81 | 1.06 | -- | -0.63 | -- | -0.788 | 0.322 | -- | 20.69 | 1475 | -- | -- |
| 52.14 | 0.339 | 9.83 | 0.977 | 0.392 | -- | -0.164 | -- | 0.229 | 22 | -- | -- | -- | -- |
| 52.24 | 0.338 | 9.83 | 0.983 | 0.392 | -- | -- | -- | 0.229 | 22.1 | -- | -- | -- | -- |
| 54.64 | 0.346 | 9.8 | 1.08 | -- | -0.386 | -- | -- | 0.303 | -- | 20.52 | 1570 | -- | -- |
| 76.49 | 0.407 | 9.85 | -- | 0.429 | -0.163 | -- | -- | 0.163 | 22.3 | 22.4 | 891 | -- | -- |
| 61.56 | 0.367 | 9.82 | 0.988 | -- | -- | -- | -- | 0.23 | -- | -- | -- | -- | -- |
| 77.71 | 0.412 | 9.85 | -- | 0.397 | -- | -- | -- | 0.12 | 22.3 | -- | -- | -- | -- |
| 82.06 | 0.422 | 9.86 | -- | -- | 0.399 | -- | -- | 0.0622 | -- | 27 | 900 | -- | -- |
| 87.32 | 0.436 | 9.84 | -- | -- | -- | -- | -- | 0.12 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 43.48 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 2 | 43.63 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 8 |
| 4 | 43.70 | radiation | 10 | 1440 | < th | dose dependent | rect. | 10 | 5 |
| 6 | 43.72 | radiation | 10 | 1440 | < th | dose dependent | rect. | 12 | 1 |
| 16 | 43.78 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 8 |
| 19 | 43.80 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 10 |
| 40 | 43.93 | temperature | 20 | 1440 | > th | dose independent | sin | 12 | NA |
| 89 | 44.08 | humidity | 80 | 1440 | < th | dose independent | rect. | 23 | 15 |
| 91 | 44.09 | temperature | 20 | 1440 | < th | dose independent | sin | 12 | NA |
| 96 | 44.10 | wind | 9 | 14400 | > th | dose dependent | rect. | 12 | 1 |
| 108 | 44.13 | humidity | 80 | 1440 | > th | dose independent | rect. | 24 | 15 |
| 130 | 44.18 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 3 |
| 136 | 44.19 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 154 | 44.23 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 187 | 44.28 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 3 |
| 305 | 44.44 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 342 | 44.50 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 350 | 44.50 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 23 |
| 351 | 44.50 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 23 |
| 377 | 44.53 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 23 |
| 379 | 44.53 | humidity | 50 | 720 | > th | dose dependent | rect. | 17 | 11 |
| 385 | 44.54 | temperature | 20 | 270 | > th | dose dependent | rect. | 18 | 20 |
| 409 | 44.58 | wind | 9 | 14400 | > th | dose independent | rect. | 6 | 7 |
| 427 | 44.60 | temperature | 20 | 720 | < th | dose independent | rect. | 4 | 20 |
| 430 | 44.61 | wind | 9 | 14400 | > th | dose independent | rect. | 10 | 3 |
| 464 | 44.65 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 10 |
| 484 | 44.67 | wind | 9 | 14400 | < th | dose independent | rect. | 3 | 11 |
| 486 | 44.67 | wind | 9 | 14400 | < th | dose independent | rect. | 1 | 13 |
| 495 | 44.68 | wind | 9 | 14400 | < th | dose independent | rect. | 5 | 9 |
| 512 | 44.69 | temperature | 20 | 1440 | < th | dose independent | no | NA | NA |
| 535 | 44.71 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 23 |
| 543 | 44.72 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 23 |
| 544 | 44.72 | radiation | 10 | 1440 | < th | dose dependent | sin | 21 | NA |
| 555 | 44.74 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 559 | 44.74 | temperature | 20 | 270 | > th | dose independent | rect. | 5 | 23 |
| 579 | 44.75 | temperature | 10 | 270 | > th | dose dependent | sin | 6 | NA |
| 631 | 44.82 | wind | 9 | 14400 | > th | dose independent | rect. | 1 | 13 |
| 638 | 44.83 | humidity | 80 | 1440 | > th | dose independent | sin | 4 | NA |
| 650 | 44.84 | humidity | 80 | 1440 | < th | dose independent | sin | 5 | NA |
| 651 | 44.84 | wind | 9 | 14400 | < th | dose independent | rect. | 10 | 4 |
| 690 | 44.88 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 769 | 44.96 | temperature | 20 | 4320 | < th | dose independent | rect. | 15 | 8 |
| 785 | 44.97 | temperature | 20 | 270 | > th | dose independent | rect. | 18 | 23 |
| 797 | 44.98 | temperature | 20 | 270 | < th | dose independent | rect. | 12 | 21 |
| 809 | 44.99 | temperature | 20 | 720 | > th | dose independent | sin | 22 | NA |
| 822 | 45.00 | temperature | 20 | 4320 | > th | dose independent | rect. | 14 | 9 |
| 953 | 45.09 | temperature | 30 | 270 | < th | dose dependent | sin | 6 | NA |
| 956 | 45.09 | temperature | 20 | 270 | > th | dose dependent | rect. | 21 | 16 |