Os02g0139300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Glycoside hydrolase, family 17 protein.
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Os02g0139300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Glycoside hydrolase, family 17 protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 94.62 | 0.457 | 8.06 | -0.677 | 2.39 | -1.7 | -0.271 | -3.55 | -0.0113 | 16 | 1.05 | 4288 | -- | -- |
| 107.13 | 0.482 | 8.02 | -0.0257 | 2.39 | -1.44 | -0.187 | -- | 0.133 | 16.2 | 1.67 | 4253 | -- | -- |
| 94.83 | 0.454 | 8.06 | -0.676 | 2.39 | -1.7 | -- | -3.53 | -0.0118 | 16 | 1.053 | 4288 | -- | -- |
| 92.09 | 0.447 | 8.01 | 0.175 | 2.39 | -1.32 | -- | -- | 0.269 | 16 | 1.828 | 17210 | -- | -- |
| 397.05 | 0.928 | 8.06 | -0.741 | -- | -1.91 | -- | -3.41 | -0.0322 | -- | 1.52 | 4245 | -- | -- |
| 149.75 | 0.574 | 8.05 | -0.247 | 2.48 | -- | -0.0737 | -- | -0.168 | 15.9 | -- | -- | -- | -- |
| 149.76 | 0.573 | 8.05 | -0.248 | 2.48 | -- | -- | -- | -0.168 | 15.9 | -- | -- | -- | -- |
| 404.12 | 0.936 | 8.01 | 0.327 | -- | -1.63 | -- | -- | 0.388 | -- | 2.073 | 17169 | -- | -- |
| 93.42 | 0.45 | 8.01 | -- | 2.4 | -1.34 | -- | -- | 0.268 | 16 | 1.83 | 17202 | -- | -- |
| 486.11 | 1.03 | 8.04 | -0.35 | -- | -- | -- | -- | -0.234 | -- | -- | -- | -- | -- |
| 151.38 | 0.576 | 8.04 | -- | 2.48 | -- | -- | -- | -0.141 | 15.9 | -- | -- | -- | -- |
| 402.05 | 0.934 | 7.99 | -- | -- | -1.56 | -- | -- | 0.324 | -- | 2.22 | 17173 | -- | -- |
| 489.33 | 1.03 | 8.03 | -- | -- | -- | -- | -- | -0.195 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 86.38 | temperature | 20 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 9 | 86.60 | temperature | 30 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 30 | 86.79 | temperature | 25 | 43200 | < th | dose dependent | rect. | 4 | 14 |
| 42 | 86.82 | radiation | 1 | 14400 | > th | dose independent | rect. | 4 | 11 |
| 55 | 86.83 | temperature | 25 | 43200 | < th | dose dependent | sin | 1 | NA |
| 64 | 86.85 | temperature | 25 | 43200 | < th | dose independent | rect. | 15 | 1 |
| 65 | 86.85 | radiation | 1 | 14400 | < th | dose independent | rect. | 23 | 16 |
| 69 | 86.85 | temperature | 25 | 43200 | < th | dose dependent | rect. | 4 | 11 |
| 87 | 86.88 | temperature | 25 | 43200 | < th | dose dependent | rect. | 7 | 3 |
| 127 | 86.93 | temperature | 30 | 43200 | < th | dose dependent | rect. | 13 | 7 |
| 135 | 86.94 | radiation | 1 | 14400 | < th | dose independent | rect. | 4 | 11 |
| 170 | 86.97 | radiation | 1 | 14400 | > th | dose independent | rect. | 4 | 3 |
| 188 | 86.97 | temperature | 30 | 43200 | < th | dose dependent | rect. | 9 | 11 |
| 191 | 86.98 | temperature | 25 | 43200 | > th | dose independent | rect. | 13 | 8 |
| 226 | 87.01 | radiation | 1 | 14400 | > th | dose independent | sin | 3 | NA |
| 234 | 87.01 | temperature | 15 | 43200 | > th | dose dependent | rect. | 9 | 11 |
| 259 | 87.03 | temperature | 25 | 43200 | > th | dose independent | rect. | 13 | 3 |
| 260 | 87.03 | temperature | 25 | 43200 | < th | dose independent | rect. | 13 | 8 |
| 285 | 87.05 | temperature | 25 | 43200 | > th | dose independent | rect. | 15 | 1 |
| 286 | 87.05 | temperature | 25 | 43200 | > th | dose independent | rect. | 13 | 5 |
| 342 | 87.07 | radiation | 1 | 14400 | < th | dose independent | rect. | 23 | 8 |
| 362 | 87.08 | radiation | 1 | 14400 | < th | dose independent | sin | 3 | NA |
| 409 | 87.09 | temperature | 15 | 43200 | > th | dose dependent | rect. | 4 | 16 |
| 425 | 87.10 | temperature | 15 | 43200 | > th | dose dependent | sin | 21 | NA |
| 467 | 87.11 | temperature | 15 | 43200 | > th | dose dependent | rect. | 9 | 1 |
| 658 | 87.18 | temperature | 25 | 43200 | < th | dose dependent | rect. | 7 | 22 |
| 660 | 87.19 | radiation | 1 | 14400 | < th | dose independent | rect. | 5 | 2 |
| 701 | 87.20 | radiation | 1 | 14400 | > th | dose independent | rect. | 11 | 21 |
| 730 | 87.21 | temperature | 25 | 43200 | < th | dose dependent | no | NA | NA |
| 756 | 87.22 | radiation | 1 | 14400 | > th | dose independent | sin | 10 | NA |
| 765 | 87.22 | radiation | 1 | 14400 | > th | dose independent | rect. | 9 | 23 |
| 836 | 87.23 | temperature | 25 | 43200 | < th | dose dependent | rect. | 12 | 23 |
| 837 | 87.23 | temperature | 25 | 43200 | < th | dose dependent | rect. | 14 | 23 |
| 948 | 87.26 | humidity | 90 | 43200 | > th | dose dependent | rect. | 11 | 12 |