Os02g0139200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Skb1 methyltransferase family protein.
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Os02g0139200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Skb1 methyltransferase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 51.48 | 0.337 | 10.3 | 0.512 | 1.96 | 0.462 | 0.556 | 0.618 | 0.114 | 16.1 | 0.04 | 42 | -- | -- |
| 52.93 | 0.341 | 10.3 | 0.506 | 1.86 | 0.42 | 0.0869 | -- | 0.141 | 16.1 | 0.04 | 42 | -- | -- |
| 52.1 | 0.339 | 10.3 | 0.494 | 1.86 | 0.411 | -- | 0.363 | 0.136 | 16.1 | 0.03595 | 41 | -- | -- |
| 52.95 | 0.341 | 10.3 | 0.508 | 1.86 | 0.422 | -- | -- | 0.141 | 16.1 | 0.03595 | 41 | -- | -- |
| 68.66 | 0.386 | 10.3 | 0.711 | -- | -1.77 | -- | 0.358 | 0.0458 | -- | 1.008 | 652 | -- | -- |
| 57.46 | 0.355 | 10.3 | 0.472 | 1.76 | -- | 0.221 | -- | 0.107 | 17.1 | -- | -- | -- | -- |
| 57.58 | 0.355 | 10.3 | 0.473 | 1.76 | -- | -- | -- | 0.108 | 17.1 | -- | -- | -- | -- |
| 60.37 | 0.362 | 10.3 | 0.297 | -- | -1.96 | -- | -- | 0.0143 | -- | 0.6139 | 652 | -- | -- |
| 59.69 | 0.362 | 10.3 | -- | 1.84 | 0.38 | -- | -- | 0.082 | 16.2 | 0.03595 | 41 | -- | -- |
| 220.65 | 0.694 | 10.3 | 0.41 | -- | -- | -- | -- | 0.0637 | -- | -- | -- | -- | -- |
| 63.47 | 0.373 | 10.3 | -- | 1.76 | -- | -- | -- | 0.0558 | 17.1 | -- | -- | -- | -- |
| 62.1 | 0.367 | 10.3 | -- | -- | -1.97 | -- | -- | -0.00158 | -- | 5.684e-05 | 651 | -- | -- |
| 225.08 | 0.7 | 10.3 | -- | -- | -- | -- | -- | 0.0182 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 41.42 | wind | 5.0 | 90 | < th | dose independent | rect. | 4 | 4 |
| 2 | 41.43 | wind | 7.0 | 90 | < th | dose independent | rect. | 8 | 20 |
| 4 | 41.65 | wind | 7.0 | 270 | < th | dose independent | rect. | 6 | 21 |
| 6 | 41.86 | wind | 5.0 | 270 | < th | dose independent | rect. | 4 | 1 |
| 7 | 41.86 | wind | 9.0 | 270 | < th | dose independent | rect. | 5 | 23 |
| 8 | 41.89 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 4 | 4 |
| 10 | 41.89 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 4 | 4 |
| 13 | 41.98 | temperature | 10.0 | 90 | > th | dose independent | rect. | 4 | 4 |
| 15 | 41.98 | temperature | 30.0 | 90 | < th | dose independent | rect. | 4 | 4 |
| 16 | 41.98 | humidity | 50.0 | 90 | > th | dose independent | rect. | 4 | 4 |
| 18 | 41.98 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 4 | 4 |
| 19 | 41.98 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 4 | 4 |
| 20 | 41.98 | temperature | 10.0 | 90 | > th | dose independent | rect. | 8 | 20 |
| 21 | 41.98 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 8 | 20 |
| 22 | 42.05 | radiation | 40.0 | 90 | < th | dose independent | rect. | 4 | 4 |
| 26 | 42.33 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 4 | 4 |
| 30 | 42.51 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 4 | 1 |
| 31 | 42.51 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 4 | 1 |
| 32 | 42.51 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 4 | 1 |
| 45 | 42.53 | temperature | 10.0 | 270 | > th | dose independent | rect. | 6 | 21 |
| 46 | 42.60 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 3 | 3 |
| 47 | 42.62 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 8 | 20 |
| 48 | 42.62 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 8 | 20 |
| 52 | 42.66 | temperature | 10.0 | 270 | > th | dose independent | rect. | 4 | 1 |
| 54 | 42.66 | temperature | 30.0 | 270 | < th | dose independent | rect. | 4 | 1 |
| 55 | 42.66 | humidity | 50.0 | 270 | > th | dose independent | rect. | 4 | 1 |
| 58 | 42.66 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 4 | 1 |
| 59 | 42.66 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 4 | 1 |
| 61 | 42.66 | radiation | 20.0 | 270 | < th | dose independent | rect. | 4 | 1 |
| 64 | 42.66 | temperature | 10.0 | 270 | > th | dose independent | rect. | 5 | 23 |
| 65 | 42.68 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 4 | 1 |
| 69 | 42.70 | wind | 9.0 | 90 | < th | dose dependent | rect. | 4 | 4 |
| 70 | 42.73 | wind | 9.0 | 1440 | < th | dose independent | rect. | 5 | 4 |
| 71 | 42.73 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 5 | 4 |
| 74 | 42.73 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 5 | 4 |
| 76 | 42.73 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 5 | 4 |
| 77 | 42.73 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 5 | 4 |
| 78 | 42.73 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 9 | 20 |
| 83 | 42.77 | radiation | 1.0 | 270 | < th | dose independent | rect. | 4 | 1 |
| 91 | 43.00 | atmosphere | 1000.0 | 90 | > th | dose dependent | rect. | 4 | 4 |
| 93 | 43.06 | wind | 1.0 | 270 | > th | dose independent | rect. | 3 | 2 |
| 102 | 43.21 | wind | 1.0 | 90 | > th | dose independent | rect. | 4 | 4 |
| 106 | 43.26 | wind | 9.0 | 270 | < th | dose dependent | rect. | 4 | 1 |
| 119 | 43.37 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 6 | 21 |
| 120 | 43.37 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 6 | 21 |
| 154 | 43.54 | radiation | 1.0 | 30 | > th | dose independent | rect. | 5 | 3 |
| 155 | 43.54 | humidity | 90.0 | 10 | < th | dose independent | rect. | 4 | 4 |
| 183 | 43.73 | temperature | 15.0 | 90 | > th | dose independent | rect. | 8 | 7 |
| 198 | 43.79 | wind | 9.0 | 90 | < th | dose independent | rect. | 8 | 7 |
| 200 | 43.79 | wind | 9.0 | 270 | < th | dose dependent | rect. | 8 | 2 |
| 203 | 43.80 | wind | 9.0 | 90 | < th | dose dependent | rect. | 8 | 20 |
| 204 | 43.81 | wind | 9.0 | 10 | < th | dose independent | rect. | 8 | 7 |
| 206 | 43.82 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 4 | 1 |
| 213 | 43.85 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 4 | 1 |
| 215 | 43.86 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 15 | 17 |
| 218 | 43.86 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 15 | 17 |
| 237 | 43.91 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 8 | 7 |
| 242 | 43.93 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 8 | 7 |
| 243 | 43.93 | temperature | 15.0 | 30 | > th | dose independent | rect. | 15 | 17 |
| 244 | 43.93 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 8 | 7 |
| 246 | 43.95 | radiation | 40.0 | 90 | < th | dose independent | rect. | 13 | 19 |
| 251 | 43.96 | atmosphere | 1015.0 | 30 | < th | dose independent | rect. | 8 | 7 |
| 252 | 43.96 | radiation | 1.0 | 10 | > th | dose independent | rect. | 8 | 7 |
| 255 | 43.96 | atmosphere | 1000.0 | 270 | > th | dose dependent | rect. | 4 | 1 |
| 257 | 43.97 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 9 | 7 |
| 260 | 43.97 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 16 | 17 |
| 312 | 44.03 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 6 | 21 |
| 331 | 44.06 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 3 | 3 |
| 333 | 44.07 | wind | 9.0 | 270 | < th | dose dependent | rect. | 7 | 4 |
| 343 | 44.12 | humidity | 90.0 | 10 | < th | dose independent | rect. | 2 | 6 |
| 346 | 44.12 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 3 | 7 |
| 360 | 44.15 | wind | 9.0 | 30 | < th | dose independent | rect. | 15 | 17 |
| 425 | 44.26 | wind | 1.0 | 30 | > th | dose independent | rect. | 8 | 7 |
| 443 | 44.31 | radiation | 1.0 | 270 | < th | dose independent | rect. | 3 | 7 |
| 460 | 44.37 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 8 | 20 |
| 491 | 44.41 | wind | 7.0 | 270 | < th | dose independent | rect. | 16 | 10 |
| 497 | 44.43 | wind | 9.0 | 10 | < th | dose dependent | rect. | 5 | 3 |
| 502 | 44.47 | wind | 5.0 | 270 | < th | dose independent | rect. | 8 | 2 |
| 514 | 44.49 | humidity | 50.0 | 30 | > th | dose independent | rect. | 8 | 20 |
| 520 | 44.50 | atmosphere | 995.0 | 90 | > th | dose dependent | rect. | 8 | 20 |
| 565 | 44.59 | radiation | 1.0 | 270 | > th | dose independent | rect. | 8 | 2 |
| 567 | 44.60 | wind | 9.0 | 270 | < th | dose dependent | rect. | 2 | 5 |
| 588 | 44.68 | humidity | 50.0 | 90 | > th | dose independent | rect. | 8 | 7 |
| 604 | 44.70 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 3 | 14 |
| 632 | 44.77 | wind | 9.0 | 90 | < th | dose dependent | rect. | 8 | 7 |
| 646 | 44.81 | radiation | 1.0 | 90 | > th | dose dependent | rect. | 18 | 13 |
| 658 | 44.84 | radiation | 1.0 | 90 | > th | dose dependent | rect. | 4 | 3 |
| 670 | 44.85 | humidity | 50.0 | 90 | > th | dose independent | rect. | 15 | 17 |
| 679 | 44.88 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 4 | 1 |
| 684 | 44.89 | humidity | 90.0 | 30 | < th | dose independent | rect. | 8 | 7 |
| 693 | 44.93 | temperature | 15.0 | 270 | > th | dose independent | rect. | 8 | 2 |
| 698 | 44.95 | atmosphere | 1015.0 | 30 | < th | dose independent | rect. | 15 | 17 |
| 710 | 45.01 | atmosphere | 1005.0 | 90 | > th | dose independent | rect. | 4 | 4 |
| 721 | 45.03 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 4 | 1 |
| 731 | 45.06 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 15 | 17 |
| 747 | 45.10 | atmosphere | 1015.0 | 90 | < th | dose dependent | rect. | 4 | 4 |
| 770 | 45.17 | wind | 9.0 | 270 | < th | dose dependent | rect. | 6 | 21 |
| 822 | 45.25 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 8 | 2 |
| 854 | 45.31 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 8 | 2 |
| 858 | 45.31 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 8 | 2 |
| 860 | 45.31 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 8 | 7 |
| 869 | 45.33 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 8 | 5 |
| 876 | 45.36 | humidity | 50.0 | 270 | > th | dose independent | rect. | 8 | 2 |
| 877 | 45.36 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 8 | 2 |
| 878 | 45.36 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 8 | 2 |
| 879 | 45.36 | temperature | 10.0 | 270 | > th | dose independent | rect. | 10 | 22 |
| 886 | 45.38 | humidity | 50.0 | 10 | > th | dose independent | rect. | 15 | 17 |
| 928 | 45.46 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 10 | 22 |
| 932 | 45.46 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 10 | 22 |