Os02g0138600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF1677, Oryza sativa family protein.
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Os02g0138600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF1677, Oryza sativa family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 46.9 | 0.322 | 11 | 0.102 | 0.535 | -0.631 | 0.416 | 1.36 | 0.0387 | 3.95 | 21.31 | 3985 | -- | -- |
| 49.94 | 0.329 | 11.1 | -0.215 | 0.537 | -0.775 | 0.507 | -- | -0.03 | 3.56 | 21.3 | 3974 | -- | -- |
| 47.37 | 0.321 | 11 | 0.105 | 0.536 | -0.626 | -- | 1.4 | 0.0367 | 3.8 | 21.38 | 3966 | -- | -- |
| 50.4 | 0.331 | 11.1 | -0.232 | 0.54 | -0.785 | -- | -- | -0.0368 | 3.77 | 21.33 | 3979 | -- | -- |
| 62.7 | 0.369 | 11 | 0.142 | -- | -0.567 | -- | 1.57 | 0.0516 | -- | 21.3 | 4580 | -- | -- |
| 64.56 | 0.377 | 11.2 | -0.689 | 0.505 | -- | 0.56 | -- | -0.296 | 4.16 | -- | -- | -- | -- |
| 65.4 | 0.379 | 11.2 | -0.695 | 0.507 | -- | -- | -- | -0.299 | 3.96 | -- | -- | -- | -- |
| 64.1 | 0.373 | 11.1 | 0.106 | -- | -1.09 | -- | -- | 0.00719 | -- | 18.7 | 10418 | -- | -- |
| 51.1 | 0.333 | 11.1 | -- | 0.532 | -0.967 | -- | -- | -0.0052 | 3.82 | 20.39 | 5435 | -- | -- |
| 79.45 | 0.417 | 11.2 | -0.675 | -- | -- | -- | -- | -0.285 | -- | -- | -- | -- | -- |
| 78.14 | 0.413 | 11.1 | -- | 0.493 | -- | -- | -- | -0.222 | 3.97 | -- | -- | -- | -- |
| 64.27 | 0.373 | 11.1 | -- | -- | -0.998 | -- | -- | -0.0404 | -- | 18.9 | 10422 | -- | -- |
| 91.45 | 0.446 | 11.1 | -- | -- | -- | -- | -- | -0.211 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 46.21 | wind | 3 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 2 | 46.27 | wind | 1 | 43200 | < th | dose independent | rect. | 23 | 3 |
| 3 | 46.30 | wind | 3 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 4 | 46.39 | temperature | 25 | 4320 | > th | dose independent | rect. | 11 | 4 |
| 5 | 46.39 | temperature | 25 | 4320 | < th | dose independent | rect. | 10 | 6 |
| 6 | 46.40 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 7 |
| 8 | 46.41 | temperature | 25 | 4320 | < th | dose independent | rect. | 11 | 3 |
| 12 | 46.44 | temperature | 20 | 4320 | < th | dose independent | rect. | 19 | 5 |
| 13 | 46.44 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 7 |
| 16 | 46.46 | temperature | 20 | 4320 | > th | dose independent | rect. | 19 | 5 |
| 43 | 46.63 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 57 | 46.70 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 67 | 46.70 | temperature | 25 | 4320 | < th | dose dependent | rect. | 9 | 1 |
| 68 | 46.71 | wind | 1 | 43200 | > th | dose independent | rect. | 23 | 3 |
| 91 | 46.83 | temperature | 20 | 4320 | < th | dose independent | rect. | 17 | 13 |
| 107 | 46.87 | temperature | 20 | 4320 | > th | dose independent | rect. | 17 | 14 |
| 113 | 46.91 | temperature | 20 | 4320 | > th | dose independent | sin | 13 | NA |
| 114 | 46.91 | temperature | 20 | 4320 | < th | dose independent | sin | 13 | NA |
| 118 | 46.92 | wind | 3 | 43200 | > th | dose independent | rect. | 19 | 3 |
| 130 | 46.94 | wind | 3 | 43200 | < th | dose dependent | rect. | 20 | 2 |
| 182 | 47.10 | temperature | 25 | 4320 | < th | dose independent | rect. | 15 | 1 |
| 201 | 47.14 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 17 |
| 204 | 47.15 | temperature | 25 | 4320 | > th | dose independent | rect. | 15 | 1 |
| 216 | 47.17 | temperature | 25 | 4320 | < th | dose dependent | rect. | 23 | 1 |
| 224 | 47.20 | temperature | 20 | 720 | > th | dose dependent | sin | 6 | NA |
| 230 | 47.21 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 19 |
| 251 | 47.25 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 5 |
| 252 | 47.25 | temperature | 25 | 4320 | < th | dose dependent | rect. | 20 | 7 |
| 271 | 47.28 | wind | 1 | 43200 | < th | dose dependent | rect. | 24 | 2 |
| 280 | 47.29 | radiation | 1 | 14400 | < th | dose dependent | rect. | 4 | 1 |
| 292 | 47.31 | temperature | 25 | 4320 | < th | dose dependent | rect. | 17 | 17 |
| 311 | 47.34 | temperature | 25 | 4320 | < th | dose dependent | sin | 11 | NA |
| 331 | 47.35 | temperature | 15 | 4320 | > th | dose dependent | rect. | 23 | 1 |
| 332 | 47.35 | temperature | 15 | 4320 | > th | dose dependent | rect. | 23 | 4 |
| 363 | 47.37 | temperature | 25 | 4320 | < th | dose dependent | rect. | 1 | 1 |
| 395 | 47.39 | temperature | 15 | 4320 | > th | dose dependent | rect. | 1 | 1 |
| 406 | 47.40 | wind | 3 | 43200 | < th | dose dependent | rect. | 8 | 4 |
| 417 | 47.41 | wind | 3 | 43200 | < th | dose independent | rect. | 9 | 5 |
| 423 | 47.41 | temperature | 15 | 4320 | > th | dose dependent | rect. | 21 | 10 |
| 425 | 47.41 | temperature | 15 | 4320 | > th | dose dependent | rect. | 21 | 13 |
| 440 | 47.42 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 2 |
| 473 | 47.44 | temperature | 15 | 4320 | > th | dose dependent | sin | 9 | NA |
| 488 | 47.45 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 11 |
| 509 | 47.46 | wind | 3 | 43200 | > th | dose independent | rect. | 11 | 3 |
| 529 | 47.47 | wind | 3 | 43200 | > th | dose independent | rect. | 9 | 5 |
| 618 | 47.50 | temperature | 25 | 4320 | < th | dose dependent | rect. | 7 | 12 |
| 644 | 47.51 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 20 |
| 645 | 47.51 | temperature | 25 | 4320 | < th | dose dependent | rect. | 7 | 20 |
| 722 | 47.54 | temperature | 25 | 4320 | < th | dose dependent | no | NA | NA |
| 806 | 47.55 | temperature | 25 | 4320 | < th | dose dependent | rect. | 22 | 23 |
| 817 | 47.56 | temperature | 20 | 1440 | > th | dose dependent | rect. | 5 | 4 |
| 852 | 47.56 | temperature | 25 | 4320 | < th | dose dependent | rect. | 1 | 23 |
| 893 | 47.57 | temperature | 20 | 270 | > th | dose dependent | rect. | 23 | 22 |