Os02g0138500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os02g0138500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 98.27 | 0.466 | 5.84 | 1.21 | 0.835 | 2.79 | -0.612 | -0.809 | 0.673 | 16.5 | 31.02 | 255 | -- | -- |
| 98.71 | 0.463 | 5.85 | 1.07 | 0.839 | 2.8 | -0.38 | -- | 0.642 | 16.7 | 30.9 | 274 | -- | -- |
| 98.96 | 0.463 | 5.85 | 1.13 | 0.836 | 2.82 | -- | -0.395 | 0.65 | 16.7 | 31.18 | 271 | -- | -- |
| 99.08 | 0.464 | 5.86 | 1.07 | 0.841 | 2.82 | -- | -- | 0.637 | 16.8 | 31.05 | 275 | -- | -- |
| 104.89 | 0.477 | 5.82 | 1.37 | -- | 2.37 | -- | -0.894 | 0.673 | -- | 31.46 | 1536 | -- | -- |
| 195.87 | 0.656 | 5.96 | 0.403 | 0.0256 | -- | 0.773 | -- | 0.132 | 3.88 | -- | -- | -- | -- |
| 197.56 | 0.658 | 5.96 | 0.392 | 0.0422 | -- | -- | -- | 0.128 | 0.534 | -- | -- | -- | -- |
| 105.33 | 0.478 | 5.85 | 1.17 | -- | 2.39 | -- | -- | 0.634 | -- | 30.9 | 1548 | -- | -- |
| 125.95 | 0.523 | 5.9 | -- | 0.679 | 2.35 | -- | -- | 0.436 | 16.9 | 31.35 | 280 | -- | -- |
| 197.67 | 0.657 | 5.96 | 0.393 | -- | -- | -- | -- | 0.128 | -- | -- | -- | -- | -- |
| 201.6 | 0.664 | 5.97 | -- | 0.0484 | -- | -- | -- | 0.0841 | 0.935 | -- | -- | -- | -- |
| 135.46 | 0.542 | 5.9 | -- | -- | 1.84 | -- | -- | 0.389 | -- | 31.8 | 1516 | -- | -- |
| 201.75 | 0.663 | 5.97 | -- | -- | -- | -- | -- | 0.0848 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 93.43 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 17 |
| 2 | 93.61 | temperature | 30 | 720 | < th | dose dependent | rect. | 22 | 19 |
| 20 | 94.74 | temperature | 20 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 23 | 95.01 | temperature | 30 | 270 | < th | dose dependent | rect. | 22 | 23 |
| 45 | 96.09 | temperature | 20 | 720 | > th | dose dependent | sin | 6 | NA |
| 62 | 96.38 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 23 |
| 73 | 96.92 | temperature | 10 | 720 | > th | dose dependent | sin | 5 | NA |
| 95 | 97.48 | temperature | 30 | 720 | < th | dose dependent | sin | 4 | NA |
| 124 | 98.39 | temperature | 20 | 270 | > th | dose dependent | rect. | 1 | 23 |
| 143 | 98.85 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 150 | 99.09 | temperature | 20 | 90 | > th | dose dependent | no | NA | NA |
| 177 | 99.72 | temperature | 20 | 270 | > th | dose dependent | rect. | 23 | 23 |
| 188 | 99.90 | temperature | 20 | 90 | > th | dose dependent | rect. | 3 | 23 |
| 191 | 99.99 | temperature | 30 | 270 | < th | dose dependent | rect. | 2 | 23 |
| 194 | 100.03 | temperature | 30 | 270 | < th | dose dependent | rect. | 13 | 23 |
| 205 | 100.19 | temperature | 20 | 10 | > th | dose dependent | no | NA | NA |
| 221 | 100.47 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 229 | 100.64 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 256 | 101.18 | temperature | 20 | 270 | > th | dose dependent | rect. | 7 | 23 |
| 258 | 101.21 | temperature | 10 | 270 | > th | dose dependent | no | NA | NA |
| 362 | 102.12 | temperature | 20 | 10 | > th | dose dependent | rect. | 4 | 23 |
| 436 | 102.36 | temperature | 30 | 1440 | < th | dose dependent | rect. | 3 | 12 |
| 492 | 102.47 | temperature | 20 | 1440 | > th | dose dependent | rect. | 8 | 22 |
| 542 | 102.57 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 565 | 102.63 | temperature | 30 | 1440 | < th | dose dependent | no | NA | NA |
| 604 | 102.69 | temperature | 20 | 1440 | > th | dose dependent | rect. | 4 | 23 |
| 731 | 102.92 | temperature | 30 | 1440 | < th | dose dependent | rect. | 11 | 23 |
| 793 | 103.05 | temperature | 10 | 1440 | > th | dose dependent | rect. | 8 | 23 |
| 806 | 103.08 | temperature | 10 | 1440 | > th | dose dependent | no | NA | NA |
| 813 | 103.09 | temperature | 10 | 1440 | > th | dose dependent | rect. | 3 | 23 |
| 873 | 103.21 | temperature | 25 | 1440 | > th | dose independent | rect. | 7 | 15 |
| 911 | 103.27 | temperature | 25 | 1440 | > th | dose independent | rect. | 2 | 20 |
| 921 | 103.28 | temperature | 10 | 1440 | > th | dose dependent | rect. | 11 | 23 |
| 981 | 103.45 | temperature | 25 | 1440 | < th | dose independent | rect. | 6 | 16 |