Os02g0138000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Leucine-rich repeat, plant specific containing protein.
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Os02g0138000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Leucine-rich repeat, plant specific containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1041.27 | 1.52 | 4.67 | -3.37 | 1.29 | -1.39 | -0.00454 | 2.13 | -1.58 | 4.66 | 24.2 | 309 | 8.84 | -- |
| 1056.23 | 1.51 | 4.66 | -3.03 | 1.24 | -1.42 | 0.938 | -- | -1.53 | 4.48 | 24.2 | 292 | 8.98 | -- |
| 1040.84 | 1.5 | 4.67 | -3.37 | 1.31 | -1.39 | -- | 2.15 | -1.57 | 4.66 | 24.2 | 295 | 8.61 | -- |
| 1057.41 | 1.51 | 4.67 | -3.01 | 1.26 | -1.36 | -- | -- | -1.5 | 4.7 | 24.1 | 236 | 7.96 | -- |
| 1109.2 | 1.55 | 4.65 | -3.13 | -- | -1.14 | -- | 1.78 | -1.44 | -- | 24.1 | 236 | 9.98 | -- |
| 1116.63 | 1.57 | 4.55 | -2.72 | 1.07 | -- | 0.0287 | -- | -1.14 | 6.74 | -- | -- | -- | -- |
| 1116.64 | 1.56 | 4.55 | -2.72 | 1.07 | -- | -- | -- | -1.14 | 6.75 | -- | -- | -- | -- |
| 1120.78 | 1.56 | 4.65 | -2.94 | -- | -1.25 | -- | -- | -1.42 | -- | 24.05 | 243 | 11 | -- |
| 1285.92 | 1.67 | 4.55 | -- | 1.06 | -0.892 | -- | -- | -1.05 | 5.43 | 24 | 228 | 8.38 | -- |
| 1176.8 | 1.6 | 4.58 | -2.69 | -- | -- | -- | -- | -1.12 | -- | -- | -- | -- | -- |
| 1311.47 | 1.69 | 4.49 | -- | 1.04 | -- | -- | -- | -0.84 | 6.9 | -- | -- | -- | -- |
| 1311.47 | 1.69 | 4.51 | -- | -- | -1.04 | -- | -- | -0.841 | -- | 48.81 | 12 | 11.2 | -- |
| 1368.32 | 1.73 | 4.51 | -- | -- | -- | -- | -- | -0.823 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 1048.70 | temperature | 25 | 720 | > th | dose dependent | rect. | 21 | 2 |
| 4 | 1053.23 | humidity | 70 | 720 | > th | dose independent | rect. | 19 | 2 |
| 5 | 1053.98 | temperature | 25 | 270 | > th | dose independent | rect. | 14 | 11 |
| 6 | 1054.18 | humidity | 50 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 7 | 1054.24 | humidity | 50 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 8 | 1054.31 | temperature | 30 | 720 | < th | dose independent | rect. | 17 | 14 |
| 9 | 1054.33 | temperature | 30 | 4320 | > th | dose dependent | rect. | 18 | 1 |
| 24 | 1054.37 | temperature | 25 | 720 | > th | dose dependent | rect. | 16 | 8 |
| 25 | 1054.45 | radiation | 30 | 1440 | > th | dose independent | rect. | 16 | 16 |
| 27 | 1055.03 | temperature | 25 | 270 | < th | dose independent | rect. | 12 | 13 |
| 37 | 1056.65 | radiation | 1 | 720 | > th | dose dependent | rect. | 18 | 1 |
| 74 | 1058.42 | temperature | 25 | 720 | > th | dose dependent | sin | 13 | NA |
| 82 | 1059.36 | temperature | 25 | 720 | < th | dose independent | rect. | 14 | 9 |
| 85 | 1059.43 | temperature | 25 | 720 | < th | dose independent | rect. | 17 | 6 |
| 89 | 1059.69 | radiation | 30 | 1440 | > th | dose dependent | rect. | 9 | 2 |
| 95 | 1059.99 | temperature | 25 | 720 | > th | dose dependent | rect. | 18 | 1 |
| 104 | 1060.35 | radiation | 40 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 107 | 1060.49 | radiation | 30 | 1440 | > th | dose dependent | rect. | 16 | 20 |
| 126 | 1060.65 | radiation | 20 | 1440 | > th | dose dependent | rect. | 16 | 16 |
| 127 | 1060.75 | humidity | 70 | 720 | > th | dose independent | rect. | 18 | 13 |
| 133 | 1060.93 | radiation | 30 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 134 | 1060.96 | radiation | 30 | 1440 | > th | dose independent | rect. | 9 | 2 |
| 154 | 1061.15 | humidity | 70 | 720 | > th | dose independent | rect. | 19 | 10 |
| 159 | 1061.37 | radiation | 20 | 30 | < th | dose independent | rect. | 23 | 15 |
| 161 | 1061.37 | radiation | 40 | 1440 | > th | dose dependent | sin | 11 | NA |
| 210 | 1061.79 | temperature | 25 | 270 | < th | dose independent | sin | 15 | NA |
| 212 | 1061.82 | radiation | 40 | 1440 | > th | dose independent | rect. | 15 | 21 |
| 245 | 1062.08 | radiation | 40 | 1440 | > th | dose independent | rect. | 8 | 4 |
| 264 | 1062.10 | radiation | 20 | 4320 | > th | dose dependent | rect. | 6 | 2 |
| 283 | 1062.15 | radiation | 30 | 4320 | < th | dose independent | rect. | 21 | 11 |
| 286 | 1062.24 | radiation | 20 | 4320 | > th | dose independent | rect. | 6 | 2 |
| 305 | 1062.30 | temperature | 25 | 270 | > th | dose independent | rect. | 14 | 18 |
| 307 | 1062.33 | radiation | 30 | 4320 | < th | dose independent | rect. | 24 | 8 |
| 309 | 1062.39 | radiation | 30 | 4320 | < th | dose independent | rect. | 2 | 6 |
| 332 | 1062.56 | radiation | 40 | 1440 | > th | dose independent | sin | 11 | NA |
| 335 | 1062.59 | humidity | 50 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 353 | 1062.66 | temperature | 25 | 720 | < th | dose independent | rect. | 19 | 1 |
| 400 | 1062.96 | radiation | 30 | 4320 | < th | dose independent | rect. | 17 | 15 |
| 405 | 1063.00 | radiation | 40 | 1440 | < th | dose independent | rect. | 9 | 2 |
| 413 | 1063.12 | radiation | 30 | 4320 | < th | dose independent | rect. | 19 | 13 |
| 435 | 1063.30 | radiation | 1 | 720 | > th | dose independent | rect. | 18 | 1 |
| 446 | 1063.32 | temperature | 25 | 270 | > th | dose independent | sin | 14 | NA |
| 467 | 1063.80 | radiation | 20 | 90 | < th | dose dependent | rect. | 20 | 19 |
| 477 | 1063.99 | humidity | 70 | 720 | < th | dose dependent | rect. | 18 | 2 |
| 545 | 1064.65 | temperature | 25 | 270 | < th | dose independent | rect. | 23 | 1 |
| 580 | 1065.36 | temperature | 25 | 270 | < th | dose independent | rect. | 18 | 10 |
| 582 | 1065.38 | wind | 1 | 720 | > th | dose independent | rect. | 4 | 1 |
| 591 | 1065.50 | radiation | 40 | 1440 | < th | dose independent | rect. | 16 | 19 |
| 594 | 1065.52 | radiation | 20 | 30 | < th | dose independent | rect. | 20 | 18 |
| 597 | 1065.56 | radiation | 40 | 1440 | < th | dose independent | rect. | 6 | 5 |
| 603 | 1065.64 | radiation | 40 | 1440 | < th | dose independent | rect. | 21 | 14 |
| 604 | 1065.65 | radiation | 40 | 1440 | < th | dose independent | rect. | 2 | 9 |
| 605 | 1065.66 | radiation | 40 | 1440 | < th | dose independent | rect. | 24 | 11 |
| 615 | 1065.74 | radiation | 40 | 1440 | > th | dose dependent | no | NA | NA |
| 616 | 1065.74 | radiation | 40 | 1440 | > th | dose dependent | rect. | 8 | 8 |
| 753 | 1065.76 | humidity | 70 | 1440 | < th | dose independent | rect. | 18 | 14 |
| 775 | 1065.79 | radiation | 40 | 1440 | < th | dose independent | rect. | 19 | 16 |
| 892 | 1066.50 | humidity | 70 | 720 | < th | dose independent | rect. | 17 | 3 |
| 907 | 1066.56 | humidity | 60 | 90 | > th | dose independent | rect. | 11 | 15 |
| 913 | 1066.64 | temperature | 25 | 720 | > th | dose independent | rect. | 15 | 4 |
| 920 | 1066.75 | humidity | 60 | 1440 | > th | dose independent | rect. | 11 | 8 |
| 928 | 1066.84 | humidity | 60 | 720 | < th | dose independent | rect. | 18 | 1 |
| 936 | 1066.93 | wind | 1 | 10 | > th | dose independent | rect. | 23 | 8 |
| 952 | 1066.94 | radiation | 30 | 30 | < th | dose dependent | rect. | 23 | 15 |
| 953 | 1066.95 | temperature | 25 | 720 | > th | dose independent | rect. | 22 | 1 |
| 1000 | 1067.16 | humidity | 60 | 1440 | > th | dose independent | rect. | 11 | 21 |