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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0136900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein kinase-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.89 (0.0304) R2 : 0.0156
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.172 (0.064) R2dN8 : 0.0201 R2N8 : 0.0156
σ : 0.573
deviance : 150.47
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
138.18 0.552 2.89 0.124 0.0701 0.56 -0.246 1.19 0.23 12 1010 3684 -- --
141.58 0.554 2.87 0.379 0.0749 0.512 -0.234 -- 0.264 10.8 1009 3911 -- --
138.41 0.548 2.89 0.116 0.075 0.562 -- 1.18 0.229 10.8 1010 3686 -- --
141.79 0.555 2.87 0.367 0.0753 0.515 -- -- 0.257 10.6 1009 3870 -- --
138.75 0.549 2.89 0.117 -- 0.565 -- 1.18 0.227 -- 1010 3684 -- --
148.32 0.571 2.89 0.25 0.0818 -- -0.229 -- 0.201 12.2 -- -- -- --
148.55 0.571 2.89 0.241 0.0826 -- -- -- 0.2 12.2 -- -- -- --
142.12 0.555 2.88 0.366 -- 0.52 -- -- 0.244 -- 1009 3814 -- --
145.05 0.561 2.88 -- 0.0721 0.441 -- -- 0.228 11.1 1010 3748 -- --
148.98 0.57 2.89 0.238 -- -- -- -- 0.198 -- -- -- -- --
150.08 0.573 2.89 -- 0.0794 -- -- -- 0.173 12 -- -- -- --
145.36 0.562 2.88 -- -- 0.454 -- -- 0.235 -- 1010 3754 -- --
150.47 0.573 2.89 -- -- -- -- -- 0.172 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 132.22 humidity 50.0 4320 > th dose independent rect. 9 1
2 132.61 temperature 10.0 10 > th dose dependent rect. 9 23
13 137.03 radiation 10.0 720 < th dose dependent rect. 8 16
14 137.04 precipitation 0.1 30 < th dose independent rect. 9 23
15 137.04 precipitation 0.1 30 < th dose dependent rect. 9 23
16 137.12 wind 3.0 30 > th dose dependent rect. 8 1
18 137.20 radiation 10.0 720 < th dose dependent rect. 11 13
19 137.32 humidity 60.0 4320 < th dose independent rect. 10 1
27 137.46 atmosphere 1005.0 90 > th dose dependent rect. 7 2
30 137.51 temperature 10.0 270 > th dose dependent rect. 9 14
35 137.57 humidity 60.0 4320 < th dose independent rect. 19 16
54 137.69 humidity 60.0 4320 < th dose dependent rect. 10 1
58 137.73 atmosphere 1005.0 10 > th dose dependent rect. 8 1
61 137.80 radiation 1.0 43200 < th dose dependent rect. 3 1
65 137.87 radiation 20.0 10 < th dose independent rect. 8 1
66 137.88 radiation 10.0 720 < th dose independent rect. 11 12
67 137.88 temperature 30.0 30 < th dose dependent rect. 8 1
71 137.93 atmosphere 1005.0 10 > th dose independent rect. 8 1
76 138.01 radiation 30.0 10 < th dose dependent rect. 8 1
77 138.02 radiation 10.0 720 < th dose independent rect. 8 16
78 138.02 temperature 30.0 270 < th dose dependent rect. 12 21
83 138.07 wind 3.0 30 < th dose dependent rect. 8 1
84 138.07 radiation 10.0 720 < th dose dependent rect. 12 5
89 138.11 radiation 10.0 720 < th dose independent rect. 11 20
91 138.14 humidity 90.0 10 < th dose independent rect. 8 1
92 138.14 atmosphere 1015.0 14400 < th dose independent rect. 19 1
97 138.19 atmosphere 1010.0 4320 > th dose dependent rect. 9 1
104 138.22 humidity 90.0 720 < th dose independent rect. 9 10
108 138.24 radiation 10.0 720 < th dose dependent sin 20 NA
111 138.25 atmosphere 1015.0 14400 < th dose independent rect. 14 6
112 138.25 atmosphere 1010.0 4320 > th dose dependent rect. 1 1
114 138.26 atmosphere 1015.0 14400 > th dose independent rect. 13 6
118 138.26 atmosphere 1015.0 14400 > th dose dependent rect. 13 1
120 138.26 atmosphere 1015.0 14400 > th dose dependent rect. 12 4
121 138.27 wind 3.0 30 > th dose independent rect. 8 1
129 138.28 radiation 10.0 720 < th dose dependent rect. 9 8
131 138.29 atmosphere 1015.0 14400 < th dose independent rect. 14 2
133 138.29 atmosphere 1015.0 14400 < th dose independent rect. 14 4
138 138.29 atmosphere 1015.0 14400 > th dose dependent rect. 11 8
147 138.31 atmosphere 1015.0 14400 > th dose independent rect. 14 1
161 138.33 humidity 70.0 30 > th dose independent rect. 8 1
178 138.35 wind 7.0 30 < th dose independent rect. 8 1
180 138.35 temperature 10.0 30 > th dose independent rect. 8 1
182 138.35 temperature 30.0 30 < th dose independent rect. 8 1
184 138.35 humidity 50.0 30 > th dose independent rect. 8 1
188 138.35 atmosphere 1010.0 30 < th dose independent rect. 8 1
191 138.35 radiation 1.0 30 > th dose independent rect. 8 1
193 138.35 precipitation 0.1 30 < th dose independent rect. 8 1
199 138.35 radiation 10.0 720 < th dose independent rect. 3 21
200 138.35 temperature 10.0 30 > th dose independent rect. 9 23
201 138.35 humidity 50.0 30 > th dose dependent rect. 8 1
202 138.35 precipitation 0.1 30 < th dose dependent rect. 8 1
210 138.37 wind 9.0 30 < th dose dependent rect. 8 1
225 138.39 radiation 10.0 720 < th dose dependent rect. 3 21
227 138.40 humidity 90.0 30 < th dose dependent rect. 8 1
229 138.40 atmosphere 1010.0 4320 > th dose dependent rect. 23 11
238 138.42 temperature 10.0 1440 > th dose independent rect. 9 1
241 138.42 atmosphere 995.0 1440 > th dose independent rect. 9 1
244 138.42 atmosphere 1015.0 1440 < th dose independent rect. 9 1
248 138.42 temperature 10.0 1440 > th dose independent rect. 10 23
259 138.43 temperature 10.0 30 > th dose dependent rect. 8 1
294 138.45 radiation 10.0 720 < th dose dependent rect. 5 19
303 138.47 wind 3.0 30 < th dose independent rect. 8 1
321 138.48 atmosphere 1010.0 4320 > th dose dependent rect. 23 7
356 138.52 temperature 25.0 30 < th dose independent rect. 2 1
358 138.52 atmosphere 1010.0 4320 > th dose dependent sin 6 NA
360 138.52 radiation 1.0 30 > th dose dependent rect. 8 1
376 138.53 atmosphere 1010.0 4320 > th dose dependent rect. 5 5
378 138.53 atmosphere 1010.0 4320 > th dose dependent rect. 3 7
389 138.54 radiation 10.0 720 < th dose independent rect. 5 19
462 138.60 temperature 30.0 30 < th dose dependent rect. 2 1
463 138.60 atmosphere 1010.0 4320 > th dose dependent rect. 5 1
477 138.61 atmosphere 1015.0 14400 > th dose dependent sin 18 NA
528 138.64 atmosphere 1015.0 30 < th dose dependent rect. 8 1
577 138.67 wind 5.0 30 < th dose independent rect. 2 1
580 138.67 temperature 20.0 4320 < th dose dependent rect. 1 1
593 138.68 radiation 10.0 720 < th dose independent sin 20 NA
618 138.69 temperature 10.0 30 > th dose independent rect. 2 1
621 138.69 humidity 50.0 30 > th dose independent rect. 2 1
624 138.69 atmosphere 995.0 30 > th dose independent rect. 2 1
625 138.69 atmosphere 1010.0 30 < th dose independent rect. 2 1
627 138.69 radiation 1.0 30 < th dose independent rect. 2 1
632 138.69 precipitation 0.1 30 < th dose independent rect. 2 1
638 138.69 temperature 10.0 30 > th dose independent rect. 3 23
640 138.69 radiation 1.0 30 < th dose dependent rect. 2 1
645 138.69 precipitation 0.1 30 < th dose dependent rect. 2 1
664 138.70 atmosphere 1010.0 4320 > th dose dependent no NA NA
665 138.70 atmosphere 1015.0 30 < th dose dependent rect. 2 1
672 138.70 atmosphere 1010.0 4320 > th dose dependent rect. 8 22
673 138.70 atmosphere 1010.0 4320 > th dose dependent rect. 5 23
676 138.70 atmosphere 1010.0 4320 > th dose dependent rect. 11 23
694 138.71 atmosphere 1010.0 4320 > th dose dependent rect. 3 23
702 138.72 atmosphere 1010.0 4320 > th dose dependent rect. 3 3
725 138.73 humidity 50.0 30 > th dose dependent rect. 2 1
751 138.74 humidity 60.0 4320 < th dose dependent rect. 19 16
804 138.77 wind 9.0 30 < th dose dependent rect. 2 1
805 138.77 atmosphere 995.0 30 > th dose dependent rect. 2 1
850 138.80 humidity 60.0 4320 > th dose independent rect. 19 16
886 138.81 radiation 10.0 720 < th dose dependent rect. 11 20
889 138.82 temperature 10.0 30 > th dose dependent rect. 2 1
939 138.85 atmosphere 1015.0 14400 < th dose independent sin 19 NA
971 138.86 wind 9.0 30 < th dose independent rect. 9 23
992 138.87 atmosphere 1015.0 14400 > th dose dependent rect. 18 4