Os02g0136800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF1677, Oryza sativa family protein.
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Os02g0136800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF1677, Oryza sativa family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 63.02 | 0.373 | 8.96 | 0.584 | 1.19 | -0.425 | 0.784 | 1.54 | 0.237 | 17.5 | 10.76 | 1317 | -- | -- |
| 67.5 | 0.383 | 8.96 | 0.484 | 1.15 | -0.416 | 0.498 | -- | 0.21 | 17.4 | 10.04 | 1390 | -- | -- |
| 64.52 | 0.374 | 8.96 | 0.582 | 1.19 | -0.418 | -- | 1.56 | 0.236 | 17.5 | 11.26 | 1317 | -- | -- |
| 68.3 | 0.385 | 8.97 | 0.405 | 1.15 | -0.44 | -- | -- | 0.185 | 17.5 | 10.33 | 1398 | -- | -- |
| 138.18 | 0.547 | 8.94 | 0.617 | -- | -0.449 | -- | 1.49 | 0.241 | -- | 13.58 | 1369 | -- | -- |
| 70.81 | 0.394 | 9.02 | 0.244 | 1.18 | -- | 0.778 | -- | 0.0388 | 17.3 | -- | -- | -- | -- |
| 72.3 | 0.398 | 9.02 | 0.243 | 1.19 | -- | -- | -- | 0.0425 | 17.3 | -- | -- | -- | -- |
| 137.65 | 0.549 | 9 | 0.193 | -- | 0.312 | -- | -- | 0.0305 | -- | 16.17 | 1370 | -- | -- |
| 70.07 | 0.39 | 9 | -- | 1.14 | -0.327 | -- | -- | 0.123 | 17.5 | 19.5 | 1339 | -- | -- |
| 146.17 | 0.565 | 9 | 0.202 | -- | -- | -- | -- | 0.0128 | -- | -- | -- | -- | -- |
| 73.86 | 0.402 | 9.02 | -- | 1.19 | -- | -- | -- | 0.0154 | 17.3 | -- | -- | -- | -- |
| 138.63 | 0.55 | 9 | -- | -- | 0.314 | -- | -- | 0.00915 | -- | 16.17 | 1370 | -- | -- |
| 147.25 | 0.566 | 9.01 | -- | -- | -- | -- | -- | -0.00964 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 58.91 | radiation | 10.0 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 2 | 59.57 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 11 | 2 |
| 3 | 59.81 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 10 | 6 |
| 6 | 60.01 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 8 | 5 |
| 7 | 60.01 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 8 | 5 |
| 16 | 60.17 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 17 | 60.17 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 30 | 60.40 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 8 | 5 |
| 46 | 60.74 | atmosphere | 1005.0 | 10 | > th | dose independent | rect. | 15 | 18 |
| 50 | 60.77 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 10 | 17 |
| 54 | 60.78 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 10 | 15 |
| 59 | 60.82 | wind | 3.0 | 4320 | > th | dose independent | rect. | 8 | 1 |
| 88 | 60.88 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 6 | 9 |
| 137 | 61.21 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 9 | 1 |
| 138 | 61.21 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 9 | 1 |
| 144 | 61.23 | radiation | 10.0 | 1440 | < th | dose dependent | sin | 20 | NA |
| 179 | 61.52 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 9 | 19 |
| 182 | 61.54 | wind | 3.0 | 4320 | < th | dose independent | rect. | 8 | 1 |
| 193 | 61.60 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 8 | 19 |
| 204 | 61.68 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 22 | 2 |
| 247 | 61.86 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 9 | 1 |
| 273 | 62.00 | temperature | 30.0 | 270 | < th | dose independent | rect. | 2 | 16 |
| 277 | 62.02 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 12 | 1 |
| 292 | 62.09 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 5 | 3 |
| 353 | 62.35 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 15 | 15 |
| 361 | 62.40 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 3 | 5 |
| 370 | 62.42 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 3 | 16 |
| 382 | 62.45 | wind | 1.0 | 14400 | > th | dose independent | rect. | 1 | 1 |
| 389 | 62.47 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 12 | 15 |
| 393 | 62.48 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 13 | 8 |
| 396 | 62.48 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 12 | 13 |
| 404 | 62.49 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 13 | 7 |
| 444 | 62.63 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 3 | 18 |
| 476 | 62.68 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 2 | 2 |
| 482 | 62.69 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 2 | 2 |
| 506 | 62.73 | humidity | 80.0 | 1440 | > th | dose dependent | rect. | 12 | 2 |
| 508 | 62.74 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 4 | 16 |
| 520 | 62.81 | wind | 1.0 | 14400 | > th | dose independent | rect. | 24 | 3 |
| 535 | 62.87 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 9 | 9 |
| 541 | 62.89 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 9 | 7 |
| 573 | 62.97 | wind | 1.0 | 4320 | > th | dose dependent | rect. | 8 | 1 |
| 594 | 63.01 | temperature | 30.0 | 10 | < th | dose independent | rect. | 4 | 17 |
| 609 | 63.04 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 21 | 16 |
| 614 | 63.06 | wind | 5.0 | 270 | < th | dose independent | rect. | 15 | 16 |
| 635 | 63.09 | radiation | 10.0 | 1440 | > th | dose independent | sin | 21 | NA |
| 647 | 63.10 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 20 | 18 |
| 657 | 63.12 | wind | 5.0 | 4320 | < th | dose dependent | rect. | 8 | 1 |
| 680 | 63.15 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 19 | 20 |
| 716 | 63.19 | wind | 9.0 | 14400 | < th | dose independent | rect. | 23 | 4 |
| 733 | 63.21 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 12 | 2 |
| 749 | 63.22 | radiation | 30.0 | 14400 | < th | dose independent | rect. | 17 | 6 |
| 760 | 63.22 | radiation | 30.0 | 270 | < th | dose independent | rect. | 15 | 15 |
| 790 | 63.26 | atmosphere | 1005.0 | 90 | > th | dose independent | rect. | 3 | 5 |
| 853 | 63.32 | wind | 1.0 | 14400 | < th | dose independent | rect. | 1 | 1 |
| 857 | 63.32 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 18 | 13 |
| 863 | 63.33 | temperature | 15.0 | 270 | > th | dose independent | rect. | 15 | 15 |
| 881 | 63.35 | atmosphere | 1005.0 | 270 | > th | dose independent | rect. | 1 | 6 |
| 903 | 63.39 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 1 | 20 |
| 905 | 63.39 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 20 | 18 |
| 911 | 63.41 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 15 | 15 |
| 912 | 63.41 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 15 | 15 |
| 915 | 63.42 | humidity | 90.0 | 720 | > th | dose independent | rect. | 22 | 2 |
| 916 | 63.42 | atmosphere | 1005.0 | 270 | > th | dose independent | rect. | 3 | 3 |
| 920 | 63.43 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 924 | 63.44 | temperature | 15.0 | 90 | > th | dose independent | rect. | 17 | 15 |
| 963 | 63.49 | atmosphere | 995.0 | 90 | > th | dose dependent | rect. | 15 | 17 |
| 966 | 63.50 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 2 | 17 |
| 968 | 63.50 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 2 | 17 |
| 970 | 63.51 | temperature | 20.0 | 270 | > th | dose independent | rect. | 21 | 16 |
| 975 | 63.52 | humidity | 50.0 | 270 | > th | dose independent | rect. | 6 | 9 |
| 998 | 63.54 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 20 | 1 |