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Os02g0135700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : DNA polymerase V family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.75 (0.0241) R2 : 0.699
β1 : 1.11 (0.0882) R2dD : 0.11 R2D : 0.0867
β2 : 1.06 (0.0628) R2dC : 0.219 R2C : 0.378
β3 : -1.06 (0.0614) R2dE : 0.228 R2E : 0.38
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0483 (0.0515) R2dN8 : 0.000852 R2N8 : -0.00457
σ : 0.45
deviance : 93.21
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_____
C
peak time of C : 14
E
wheather : wind
threshold : 4.668
memory length : 289
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 2.92
open length of G : 1.8

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
92.22 0.451 9.76 1.07 1.08 -1.05 -0.00355 -0.759 0.0402 14.1 4.3 274 3.01 1.78
93.42 0.45 9.75 1.09 1.03 -1.06 0.0501 -- 0.0558 14 4.9 283 2.95 1.77
91.92 0.447 9.75 1.07 1.06 -1.05 -- -0.653 0.0511 14 4.7 287 2.95 1.75
93.21 0.45 9.75 1.11 1.06 -1.06 -- -- 0.0483 14 4.668 289 2.92 1.8
133.42 0.538 9.77 1.09 -- -1.51 -- -0.399 0.089 -- 5.469 331 0.117 4.72
125 0.524 9.78 1.04 1.68 -- 0.668 -- -0.00782 15.7 -- -- -- --
126.33 0.526 9.78 1.05 1.68 -- -- -- -0.00404 15.7 -- -- -- --
132.61 0.536 9.77 1.12 -- -1.59 -- -- 0.0726 -- 5.5 340 0.0165 4.53
126.02 0.523 9.77 -- 1.05 -1.02 -- -- -0.0415 14 4.845 296 2.9 1.78
282.53 0.785 9.78 0.982 -- -- -- -- -0.0488 -- -- -- -- --
155.51 0.583 9.81 -- 1.66 -- -- -- -0.121 15.7 -- -- -- --
166.28 0.601 9.78 -- -- -1.55 -- -- 0.0537 -- 5.4 343 0.0167 4.39
307.97 0.819 9.8 -- -- -- -- -- -0.158 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 92.70 wind 5.0 270 < th dose independent rect. 3 2
2 92.89 wind 5.0 90 < th dose independent rect. 3 5
3 93.13 precipitation 0.1 270 < th dose independent rect. 3 2
4 93.13 precipitation 0.1 270 < th dose dependent rect. 3 2
5 93.38 wind 9.0 270 < th dose independent rect. 5 22
6 93.60 precipitation 0.1 90 < th dose independent rect. 3 5
7 93.60 precipitation 0.1 90 < th dose dependent rect. 3 5
8 93.71 wind 9.0 90 < th dose independent rect. 8 19
9 94.05 wind 9.0 90 < th dose dependent rect. 3 5
10 94.22 wind 5.0 270 < th dose independent rect. 1 5
17 94.55 temperature 10.0 90 > th dose independent rect. 3 5
19 94.55 temperature 30.0 90 < th dose independent rect. 3 5
20 94.55 humidity 50.0 90 > th dose independent rect. 3 5
22 94.55 atmosphere 995.0 90 > th dose independent rect. 3 5
23 94.55 atmosphere 1015.0 90 < th dose independent rect. 3 5
24 94.55 temperature 10.0 90 > th dose independent rect. 8 19
25 94.57 temperature 25.0 270 < th dose independent rect. 3 2
26 94.61 radiation 40.0 90 < th dose independent rect. 3 5
27 94.79 wind 9.0 270 < th dose dependent rect. 3 2
29 94.87 temperature 10.0 270 > th dose independent rect. 3 2
32 94.87 humidity 50.0 270 > th dose independent rect. 3 2
35 94.87 atmosphere 995.0 270 > th dose independent rect. 3 2
36 94.87 atmosphere 1010.0 270 < th dose independent rect. 3 2
38 94.87 radiation 20.0 270 < th dose independent rect. 3 2
42 94.87 temperature 10.0 270 > th dose independent rect. 5 22
43 94.88 radiation 40.0 270 < th dose dependent rect. 3 2
46 94.92 radiation 1.0 270 < th dose dependent rect. 3 2
47 94.94 radiation 1.0 270 < th dose independent rect. 3 2
50 95.02 precipitation 0.1 90 < th dose independent rect. 8 19
51 95.02 precipitation 0.1 90 < th dose dependent rect. 8 19
60 95.94 wind 9.0 270 < th dose independent rect. 6 20
64 96.10 precipitation 0.1 270 < th dose independent rect. 1 6
65 96.10 precipitation 0.1 270 < th dose dependent rect. 1 6
69 96.31 wind 7.0 10 < th dose dependent rect. 3 6
71 96.33 precipitation 0.1 10 < th dose independent rect. 3 5
72 96.33 precipitation 0.1 10 < th dose dependent rect. 3 5
75 96.38 radiation 10.0 270 < th dose independent rect. 1 6
91 96.70 radiation 20.0 270 < th dose dependent rect. 1 6
93 96.74 temperature 10.0 90 > th dose dependent rect. 3 5
95 96.77 wind 1.0 270 > th dose independent rect. 3 1
107 96.90 radiation 40.0 90 < th dose dependent rect. 3 6
109 96.93 temperature 15.0 270 > th dose independent rect. 14 16
110 96.94 humidity 50.0 270 > th dose dependent rect. 3 2
125 96.96 temperature 10.0 270 > th dose independent rect. 6 20
127 97.03 radiation 40.0 270 < th dose dependent rect. 2 4
129 97.06 wind 7.0 270 < th dose independent rect. 6 8
131 97.08 temperature 10.0 270 > th dose dependent rect. 3 2
138 97.20 humidity 70.0 270 > th dose independent rect. 1 6
142 97.23 wind 9.0 10 < th dose independent rect. 8 19
143 97.24 temperature 10.0 270 > th dose independent rect. 1 6
145 97.24 temperature 30.0 270 < th dose independent rect. 1 6
146 97.24 humidity 50.0 270 > th dose independent rect. 1 6
148 97.24 atmosphere 995.0 270 > th dose independent rect. 1 6
156 97.26 precipitation 0.1 270 < th dose independent rect. 14 16
157 97.26 precipitation 0.1 270 < th dose dependent rect. 14 16
158 97.27 radiation 40.0 90 < th dose independent rect. 3 16
199 97.68 precipitation 0.1 10 < th dose independent rect. 8 19
201 97.68 precipitation 0.1 10 < th dose dependent rect. 8 19
223 97.74 humidity 50.0 90 > th dose dependent rect. 19 8
239 97.84 precipitation 0.1 270 < th dose independent rect. 6 8
240 97.84 precipitation 0.1 270 < th dose dependent rect. 6 8
268 97.99 temperature 10.0 270 > th dose independent rect. 6 8
269 97.99 atmosphere 995.0 270 > th dose independent rect. 6 8
270 97.99 atmosphere 1015.0 270 < th dose independent rect. 6 8
272 98.01 atmosphere 995.0 90 > th dose independent rect. 8 19
274 98.02 radiation 40.0 270 < th dose independent rect. 13 17
275 98.06 precipitation 0.1 270 < th dose independent rect. 5 22
276 98.06 precipitation 0.1 270 < th dose dependent rect. 5 22
286 98.15 precipitation 0.1 270 < th dose independent rect. 6 20
288 98.15 precipitation 0.1 270 < th dose dependent rect. 6 20
294 98.19 humidity 50.0 90 > th dose dependent rect. 3 5
302 98.23 radiation 40.0 90 < th dose dependent rect. 3 8
304 98.24 atmosphere 1005.0 90 > th dose independent rect. 3 5
306 98.25 atmosphere 995.0 90 > th dose dependent rect. 3 5
331 98.47 precipitation 0.1 270 < th dose independent rect. 2 16
333 98.47 precipitation 0.1 270 < th dose dependent rect. 2 16
339 98.51 wind 1.0 270 > th dose independent rect. 1 6
341 98.56 humidity 50.0 270 > th dose independent rect. 6 8
347 98.63 radiation 40.0 90 < th dose dependent rect. 3 16
380 98.76 atmosphere 995.0 270 > th dose independent rect. 14 16
384 98.77 wind 9.0 270 < th dose independent rect. 14 16
385 98.78 humidity 50.0 90 > th dose independent rect. 8 19
387 98.79 temperature 10.0 10 > th dose dependent rect. 3 5
404 98.85 atmosphere 1005.0 270 > th dose independent rect. 3 2
462 99.10 radiation 1.0 270 < th dose dependent rect. 5 21
483 99.30 atmosphere 995.0 270 > th dose dependent rect. 3 2
488 99.34 precipitation 0.1 90 < th dose independent rect. 19 8
489 99.34 precipitation 0.1 90 < th dose dependent rect. 19 8
491 99.38 radiation 1.0 270 < th dose dependent rect. 18 8
509 99.41 radiation 10.0 270 < th dose independent rect. 18 8
515 99.43 wind 9.0 270 < th dose independent rect. 18 8
516 99.43 temperature 10.0 270 > th dose independent rect. 18 8
517 99.43 humidity 50.0 270 > th dose independent rect. 18 8
521 99.43 temperature 10.0 270 > th dose independent rect. 2 16
522 99.43 atmosphere 1015.0 270 < th dose independent rect. 2 16
525 99.43 wind 9.0 270 < th dose dependent rect. 6 8
567 99.60 wind 9.0 90 < th dose dependent rect. 8 19
569 99.62 atmosphere 995.0 270 > th dose independent rect. 18 8
608 99.71 temperature 30.0 90 < th dose independent rect. 19 8
639 99.76 atmosphere 995.0 270 > th dose independent rect. 2 16
666 99.90 atmosphere 1015.0 270 < th dose independent rect. 14 16
684 99.98 precipitation 0.1 90 < th dose independent rect. 8 7
685 99.98 radiation 40.0 90 < th dose independent rect. 3 18
686 99.98 precipitation 0.1 90 < th dose dependent rect. 8 7
695 100.04 atmosphere 995.0 10 > th dose dependent rect. 3 5
711 100.10 wind 9.0 90 < th dose independent rect. 8 7
728 100.13 wind 9.0 270 < th dose dependent rect. 6 19
737 100.16 temperature 30.0 270 < th dose dependent rect. 3 2
753 100.22 temperature 10.0 90 > th dose independent rect. 8 7
754 100.22 atmosphere 1015.0 90 < th dose independent rect. 8 7
782 100.32 radiation 40.0 10 < th dose independent rect. 4 16
878 100.62 atmosphere 995.0 90 > th dose independent rect. 8 7
932 100.70 humidity 50.0 270 > th dose independent rect. 6 19
934 100.70 temperature 10.0 270 > th dose dependent rect. 6 7
953 100.74 radiation 1.0 270 < th dose dependent rect. 12 14
954 100.75 wind 9.0 270 < th dose independent rect. 2 16
983 100.84 wind 9.0 90 < th dose dependent rect. 19 8
991 100.87 radiation 40.0 10 < th dose dependent rect. 4 15
992 100.88 atmosphere 1015.0 90 < th dose independent rect. 8 19