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Os02g0135500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF563 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.99 (0.0203) R2 : 0.0553
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.221 (0.0427) R2dN8 : 0.0714 R2N8 : 0.0553
σ : 0.382
deviance : 66.99
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
43.02 0.308 10 0.451 0.439 0.381 0.324 -3.87 0.292 2.47 1004 16 -- --
46.17 0.316 9.99 0.577 0.423 -0.234 0.391 -- 0.244 2.44 1074 2 -- --
43.33 0.309 10 0.42 0.441 0.476 -- -4.46 0.289 2.52 1004 11 -- --
46.71 0.318 9.99 0.572 0.424 -0.249 -- -- 0.241 2.53 1086 2 -- --
54.66 0.344 10 0.453 -- 0.399 -- -4.22 0.289 -- 1004 7 -- --
46.78 0.321 9.98 0.569 0.429 -- 0.405 -- 0.276 2.51 -- -- -- --
47.36 0.322 9.98 0.558 0.431 -- -- -- 0.274 2.6 -- -- -- --
57.24 0.352 9.99 0.592 -- -0.305 -- -- 0.244 -- 1098 2 -- --
55.27 0.346 10 -- 0.437 -0.173 -- -- 0.188 2.57 1094 2 -- --
58.22 0.357 9.98 0.577 -- -- -- -- 0.285 -- -- -- -- --
55.58 0.349 9.99 -- 0.442 -- -- -- 0.212 2.62 -- -- -- --
66.44 0.38 10 -- -- -0.229 -- -- 0.189 -- 1101 2 -- --
66.99 0.382 9.99 -- -- -- -- -- 0.221 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 41.75 temperature 25 270 > th dose independent rect. 9 3
3 41.81 temperature 10 270 > th dose dependent rect. 8 16
4 41.84 temperature 20 270 > th dose dependent rect. 9 2
5 41.87 temperature 20 270 > th dose dependent rect. 8 4
11 42.01 temperature 20 10 > th dose dependent rect. 9 6
15 42.04 temperature 25 270 > th dose dependent rect. 17 19
16 42.05 temperature 25 270 < th dose independent rect. 2 17
19 42.09 temperature 25 270 < th dose independent rect. 1 20
39 42.27 temperature 15 30 > th dose dependent rect. 9 19
42 42.30 temperature 20 10 > th dose dependent rect. 9 17
71 42.50 temperature 30 270 < th dose dependent rect. 2 17
94 42.57 temperature 20 10 > th dose dependent rect. 9 11
105 42.62 atmosphere 1005 270 < th dose dependent rect. 8 4
149 42.74 temperature 20 10 > th dose dependent rect. 9 13
158 42.75 temperature 25 10 > th dose dependent rect. 17 22
195 42.82 temperature 25 10 > th dose dependent rect. 19 20
223 42.89 temperature 30 90 < th dose dependent sin 23 NA
225 42.89 temperature 25 270 > th dose dependent rect. 3 9
262 42.95 atmosphere 1005 90 < th dose dependent rect. 23 14
271 42.96 atmosphere 1005 90 < th dose dependent rect. 23 16
273 42.97 temperature 25 270 > th dose independent sin 2 NA
281 42.98 temperature 25 270 > th dose dependent sin 8 NA
287 42.98 atmosphere 1005 10 < th dose dependent rect. 9 20
316 43.02 atmosphere 1005 10 < th dose dependent rect. 23 17
318 43.02 atmosphere 1005 10 < th dose dependent rect. 20 20
334 43.04 temperature 25 270 > th dose independent rect. 16 21
344 43.05 temperature 30 10 < th dose dependent sin 22 NA
389 43.08 temperature 25 270 > th dose independent rect. 8 14
395 43.08 atmosphere 1005 10 < th dose dependent rect. 24 13
404 43.09 temperature 25 270 < th dose independent sin 2 NA
482 43.14 humidity 90 270 > th dose independent rect. 3 17
523 43.17 temperature 25 90 > th dose independent rect. 9 11
528 43.17 temperature 30 270 < th dose dependent rect. 10 9
553 43.19 atmosphere 1015 30 < th dose dependent rect. 9 6
612 43.23 atmosphere 1005 10 < th dose dependent sin 3 NA
621 43.23 temperature 25 10 > th dose dependent rect. 21 18
627 43.24 temperature 25 720 < th dose independent rect. 4 9
705 43.28 atmosphere 1005 10 < th dose dependent rect. 6 23
738 43.30 wind 7 270 < th dose independent rect. 5 23
756 43.31 temperature 25 720 < th dose independent rect. 10 1
769 43.31 temperature 25 10 > th dose dependent rect. 23 16
780 43.31 atmosphere 1005 10 < th dose dependent rect. 1 23
781 43.31 atmosphere 1005 10 < th dose dependent rect. 15 23
808 43.33 humidity 90 270 < th dose independent sin 1 NA
836 43.34 temperature 25 720 < th dose independent rect. 7 6
839 43.34 atmosphere 1005 10 < th dose dependent no NA NA
853 43.34 atmosphere 1005 10 < th dose dependent rect. 11 23
874 43.36 temperature 25 720 < th dose independent rect. 9 3
876 43.36 atmosphere 1010 30 < th dose independent rect. 9 6
884 43.36 temperature 30 720 < th dose dependent rect. 4 12
925 43.37 atmosphere 1005 10 < th dose dependent rect. 3 23
955 43.39 temperature 25 10 > th dose independent rect. 9 11
970 43.39 temperature 25 10 > th dose dependent rect. 4 11
986 43.39 temperature 10 270 > th dose dependent rect. 16 22