Os02g0135200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Blast and wounding induced mitogen-activated protein kinase.
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Os02g0135200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Blast and wounding induced mitogen-activated protein kinase.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 162.14 | 0.598 | 8.49 | 0.527 | 1.34 | -1.09 | 0.21 | -1.27 | 0.61 | 5.22 | 57.91 | 1304 | -- | -- |
| 164.11 | 0.597 | 8.47 | 0.552 | 1.34 | -1.15 | 0.425 | -- | 0.617 | 5.26 | 57 | 1300 | -- | -- |
| 162.12 | 0.593 | 8.48 | 0.539 | 1.34 | -1.08 | -- | -1.19 | 0.621 | 5.2 | 57 | 1302 | -- | -- |
| 163.86 | 0.596 | 8.47 | 0.591 | 1.34 | -1.2 | -- | -- | 0.602 | 5.22 | 56.26 | 1302 | -- | -- |
| 191.57 | 0.645 | 8.43 | 0.475 | -- | -1.49 | -- | -0.389 | 0.915 | -- | 73 | 526 | -- | -- |
| 209.9 | 0.679 | 8.42 | 0.354 | 1.26 | -- | -0.00101 | -- | 0.838 | 5.57 | -- | -- | -- | -- |
| 209.9 | 0.678 | 8.42 | 0.354 | 1.26 | -- | -- | -- | 0.838 | 5.57 | -- | -- | -- | -- |
| 191.69 | 0.645 | 8.42 | 0.506 | -- | -1.5 | -- | -- | 0.927 | -- | 73 | 526 | -- | -- |
| 172.98 | 0.613 | 8.47 | -- | 1.36 | -1.12 | -- | -- | 0.574 | 5.23 | 57 | 1302 | -- | -- |
| 291.97 | 0.798 | 8.43 | 0.395 | -- | -- | -- | -- | 0.869 | -- | -- | -- | -- | -- |
| 213.2 | 0.683 | 8.43 | -- | 1.26 | -- | -- | -- | 0.799 | 5.56 | -- | -- | -- | -- |
| 198.39 | 0.656 | 8.43 | -- | -- | -1.48 | -- | -- | 0.871 | -- | 72.95 | 522 | -- | -- |
| 296.08 | 0.803 | 8.44 | -- | -- | -- | -- | -- | 0.825 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 161.68 | humidity | 90 | 1440 | < th | dose dependent | rect. | 11 | 8 |
| 5 | 162.33 | humidity | 50 | 1440 | > th | dose dependent | rect. | 11 | 8 |
| 7 | 162.42 | humidity | 90 | 1440 | < th | dose dependent | rect. | 15 | 3 |
| 10 | 162.78 | humidity | 50 | 1440 | > th | dose dependent | rect. | 15 | 3 |
| 61 | 163.98 | humidity | 60 | 1440 | < th | dose independent | rect. | 14 | 3 |
| 70 | 164.24 | humidity | 60 | 1440 | > th | dose independent | rect. | 14 | 3 |
| 72 | 164.32 | humidity | 60 | 1440 | < th | dose independent | rect. | 14 | 22 |
| 85 | 164.54 | humidity | 60 | 1440 | > th | dose independent | rect. | 14 | 20 |
| 94 | 164.67 | humidity | 80 | 1440 | < th | dose dependent | sin | 20 | NA |
| 107 | 164.84 | humidity | 70 | 1440 | < th | dose dependent | rect. | 14 | 20 |
| 210 | 165.69 | humidity | 60 | 1440 | < th | dose independent | sin | 19 | NA |
| 234 | 165.81 | humidity | 60 | 1440 | > th | dose independent | rect. | 14 | 10 |
| 245 | 165.85 | humidity | 60 | 1440 | > th | dose independent | rect. | 14 | 15 |
| 248 | 165.86 | humidity | 60 | 1440 | > th | dose independent | rect. | 14 | 6 |
| 251 | 165.86 | humidity | 60 | 1440 | > th | dose independent | rect. | 14 | 13 |
| 255 | 165.87 | humidity | 50 | 1440 | > th | dose dependent | sin | 21 | NA |
| 258 | 165.89 | humidity | 60 | 1440 | < th | dose independent | rect. | 11 | 23 |
| 273 | 165.95 | humidity | 70 | 720 | < th | dose independent | rect. | 17 | 1 |
| 330 | 166.10 | humidity | 60 | 1440 | < th | dose independent | rect. | 14 | 6 |
| 347 | 166.11 | humidity | 60 | 1440 | < th | dose independent | rect. | 9 | 11 |
| 365 | 166.12 | humidity | 60 | 1440 | < th | dose independent | no | NA | NA |
| 467 | 166.16 | humidity | 60 | 1440 | > th | dose independent | sin | 18 | NA |
| 560 | 166.35 | humidity | 60 | 1440 | < th | dose dependent | rect. | 11 | 7 |
| 743 | 166.74 | humidity | 70 | 720 | < th | dose independent | rect. | 16 | 17 |
| 843 | 166.93 | humidity | 60 | 1440 | < th | dose dependent | no | NA | NA |
| 931 | 166.97 | humidity | 60 | 1440 | > th | dose independent | rect. | 7 | 17 |
| 933 | 166.97 | humidity | 60 | 1440 | > th | dose independent | rect. | 4 | 20 |
| 934 | 166.97 | humidity | 60 | 1440 | > th | dose independent | rect. | 2 | 21 |
| 954 | 166.99 | humidity | 60 | 1440 | > th | dose independent | rect. | 8 | 14 |
| 963 | 166.99 | humidity | 60 | 1440 | > th | dose independent | rect. | 6 | 21 |
| 965 | 166.99 | humidity | 60 | 1440 | > th | dose independent | rect. | 6 | 23 |
| 968 | 167.00 | humidity | 60 | 1440 | > th | dose independent | no | NA | NA |
| 971 | 167.00 | humidity | 60 | 1440 | > th | dose independent | rect. | 2 | 17 |
| 989 | 167.00 | humidity | 60 | 1440 | > th | dose independent | rect. | 21 | 22 |
| 996 | 167.01 | humidity | 60 | 1440 | > th | dose independent | rect. | 8 | 11 |