FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0135000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.81 (0.0305) R2 : 0.00246
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.068 (0.0641) R2dN8 : 0.00318 R2N8 : 0.00246
σ : 0.574
deviance : 151.01
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
145.11 0.566 2.85 0.279 0.056 0.453 0.0574 2.01 0.00782 18 10.19 4334 -- --
148.02 0.567 2.83 0.138 0.0578 0.364 0.0169 -- -0.0289 17.8 10.42 4380 -- --
145.11 0.561 2.85 0.274 0.0586 0.452 -- 2.03 0.00917 17.6 10.22 4333 -- --
147.82 0.566 2.82 0.121 0.0661 0.297 -- -- 0.0122 17.2 10.4 4343 -- --
145.28 0.561 2.85 0.275 -- 0.452 -- 2.06 0.00918 -- 10.22 4333 -- --
150.31 0.575 2.8 0.102 0.0851 -- 0.0111 -- 0.0808 13.7 -- -- -- --
150.31 0.574 2.8 0.102 0.0851 -- -- -- 0.0809 13.7 -- -- -- --
147.81 0.566 2.82 0.14 -- 0.264 -- -- -0.0307 -- 10.27 4834 -- --
148.24 0.567 2.82 -- 0.0633 0.284 -- -- 0.00537 17.1 10.4 4380 -- --
150.75 0.574 2.8 0.0986 -- -- -- -- 0.079 -- -- -- -- --
150.59 0.574 2.81 -- 0.0832 -- -- -- 0.0695 13.6 -- -- -- --
148.12 0.567 2.83 -- -- 0.264 -- -- -0.0659 -- 10.39 4870 -- --
151.01 0.574 2.81 -- -- -- -- -- 0.068 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 134.88 humidity 70.0 30 < th dose independent rect. 12 1
2 135.62 temperature 25.0 30 > th dose dependent rect. 12 1
3 135.81 radiation 40.0 30 > th dose independent rect. 12 1
6 135.93 radiation 10.0 30 > th dose dependent rect. 12 1
11 136.09 wind 3.0 30 > th dose independent rect. 12 1
12 136.12 atmosphere 1010.0 30 < th dose independent rect. 12 1
14 136.15 wind 1.0 30 > th dose dependent rect. 12 1
15 136.16 temperature 25.0 30 > th dose independent rect. 12 1
17 136.30 atmosphere 1000.0 30 > th dose independent rect. 12 1
18 136.33 wind 7.0 30 < th dose independent rect. 12 1
23 136.48 temperature 10.0 30 > th dose independent rect. 12 1
28 136.48 precipitation 0.1 30 < th dose independent rect. 12 1
29 136.48 temperature 10.0 30 > th dose independent rect. 13 23
30 136.48 precipitation 0.1 30 < th dose dependent rect. 12 1
31 136.50 temperature 10.0 1440 > th dose independent rect. 13 1
35 136.50 atmosphere 995.0 1440 > th dose independent rect. 13 1
38 136.50 temperature 10.0 1440 > th dose independent rect. 14 23
42 136.55 atmosphere 995.0 30 > th dose dependent rect. 12 1
44 136.64 humidity 90.0 30 < th dose dependent rect. 12 1
46 136.75 humidity 50.0 30 > th dose independent rect. 12 1
53 137.38 atmosphere 1015.0 30 < th dose dependent rect. 12 1
56 137.48 wind 9.0 30 < th dose dependent rect. 12 1
58 137.62 wind 7.0 10 > th dose dependent rect. 12 1
60 137.64 temperature 30.0 30 < th dose independent rect. 12 1
63 137.86 humidity 50.0 30 > th dose dependent rect. 12 1
66 137.96 wind 9.0 30 < th dose independent rect. 13 23
111 142.20 wind 1.0 270 < th dose independent rect. 18 1
112 142.20 wind 1.0 270 < th dose dependent rect. 18 1
122 143.32 wind 7.0 30 > th dose independent rect. 17 1
127 143.98 wind 7.0 30 > th dose independent rect. 17 5
141 144.35 wind 9.0 270 > th dose dependent rect. 9 1
153 144.84 wind 7.0 30 > th dose dependent rect. 17 1
154 144.92 wind 3.0 90 > th dose dependent rect. 4 1
162 145.25 atmosphere 1005.0 10 > th dose dependent rect. 17 5
171 145.34 atmosphere 1005.0 90 > th dose dependent rect. 16 5
173 145.38 atmosphere 1005.0 10 > th dose dependent rect. 12 10
177 145.51 wind 3.0 90 > th dose independent rect. 4 1
183 145.67 wind 9.0 4320 > th dose dependent rect. 13 1
184 145.68 atmosphere 1005.0 30 > th dose dependent rect. 17 1
190 145.77 wind 7.0 30 > th dose dependent rect. 17 5
195 145.78 wind 3.0 10 < th dose dependent rect. 19 3
207 145.82 wind 9.0 270 > th dose independent rect. 9 1
225 145.91 wind 1.0 30 < th dose dependent rect. 15 7
229 145.94 precipitation 0.1 30 < th dose independent rect. 13 23
230 145.94 precipitation 0.1 30 < th dose dependent rect. 13 23
231 145.96 temperature 10.0 90 > th dose dependent rect. 13 12
244 146.04 temperature 10.0 90 > th dose dependent rect. 13 15
260 146.10 wind 3.0 270 < th dose independent rect. 16 4
265 146.11 temperature 10.0 30 > th dose dependent rect. 13 23
273 146.17 wind 3.0 720 > th dose independent rect. 11 1
282 146.22 temperature 10.0 10 > th dose dependent rect. 13 16
285 146.25 wind 3.0 270 < th dose dependent rect. 16 4
300 146.28 wind 1.0 30 < th dose independent rect. 15 7
308 146.29 temperature 20.0 30 > th dose dependent rect. 13 22
328 146.39 humidity 70.0 270 < th dose independent rect. 17 1
331 146.40 temperature 25.0 10 < th dose dependent rect. 17 5
346 146.48 wind 3.0 1440 > th dose independent rect. 24 4
349 146.49 humidity 50.0 720 > th dose independent rect. 13 1
375 146.56 wind 9.0 4320 > th dose independent rect. 13 1
381 146.58 temperature 25.0 90 < th dose dependent rect. 16 1
387 146.59 wind 5.0 720 < th dose independent rect. 2 7
396 146.62 wind 3.0 1440 > th dose dependent rect. 2 2
398 146.63 wind 3.0 1440 < th dose independent rect. 24 4
406 146.65 temperature 25.0 90 < th dose independent rect. 16 6
416 146.68 wind 1.0 90 < th dose independent rect. 5 3
417 146.68 wind 1.0 720 > th dose independent rect. 9 4
433 146.72 temperature 30.0 90 < th dose dependent rect. 16 15
438 146.74 atmosphere 1005.0 270 > th dose independent rect. 17 1
495 146.85 wind 5.0 720 < th dose independent rect. 22 11
503 146.86 temperature 10.0 10 > th dose dependent rect. 5 8
507 146.87 wind 3.0 10 < th dose dependent rect. 5 3
512 146.88 wind 1.0 720 > th dose dependent rect. 11 1
515 146.90 temperature 25.0 90 > th dose independent rect. 13 17
518 146.91 humidity 80.0 30 < th dose dependent rect. 19 1
520 146.91 wind 1.0 1440 > th dose dependent rect. 24 4
541 146.95 wind 1.0 90 < th dose independent rect. 6 1
545 146.95 humidity 70.0 270 < th dose dependent rect. 17 1
552 146.96 wind 7.0 1440 < th dose dependent rect. 2 1
560 146.98 wind 9.0 4320 < th dose independent rect. 14 2
608 147.05 wind 9.0 1440 < th dose dependent rect. 24 4
618 147.07 humidity 50.0 720 < th dose independent rect. 11 1
632 147.07 wind 1.0 90 < th dose independent rect. 5 11
635 147.07 wind 1.0 90 < th dose independent rect. 5 13
645 147.07 humidity 50.0 720 < th dose dependent rect. 11 1
669 147.08 humidity 90.0 720 < th dose independent rect. 9 4
689 147.11 atmosphere 995.0 30 > th dose independent rect. 13 23
691 147.11 radiation 20.0 720 > th dose dependent rect. 6 1
733 147.14 wind 1.0 10 < th dose dependent rect. 6 1
749 147.16 wind 9.0 4320 > th dose dependent rect. 18 22
758 147.18 humidity 80.0 720 < th dose independent rect. 10 2
764 147.19 humidity 90.0 30 < th dose independent rect. 5 1
767 147.19 temperature 25.0 10 < th dose dependent rect. 17 3
794 147.22 atmosphere 1000.0 10 > th dose independent rect. 5 8
796 147.22 temperature 25.0 90 < th dose independent rect. 16 15
805 147.23 temperature 10.0 720 > th dose dependent rect. 13 1
824 147.25 temperature 20.0 30 > th dose dependent rect. 13 7
861 147.28 temperature 25.0 10 < th dose independent rect. 17 5
884 147.30 wind 9.0 4320 > th dose dependent rect. 13 9
894 147.31 wind 7.0 1440 > th dose independent rect. 23 10
902 147.32 radiation 1.0 90 > th dose independent rect. 4 1
915 147.32 radiation 1.0 90 > th dose dependent rect. 4 1
933 147.33 atmosphere 1010.0 90 < th dose independent rect. 4 9
942 147.34 temperature 20.0 90 < th dose dependent rect. 4 1
943 147.34 humidity 80.0 4320 < th dose dependent rect. 22 2
955 147.36 wind 1.0 30 < th dose independent rect. 14 4
960 147.36 wind 1.0 30 < th dose dependent rect. 14 2
967 147.37 wind 1.0 30 < th dose independent rect. 14 2
968 147.37 wind 5.0 720 < th dose independent rect. 6 3
976 147.37 radiation 10.0 90 > th dose independent rect. 13 22
985 147.38 wind 9.0 10 < th dose independent rect. 5 8
995 147.39 humidity 90.0 90 > th dose independent rect. 14 1
999 147.39 temperature 25.0 90 > th dose independent rect. 13 21
1000 147.39 humidity 90.0 90 > th dose dependent rect. 14 1