Os02g0134500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
FiT-DB / Search/ Help/ Sample detail
|
Os02g0134500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Conserved hypothetical protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 15.13 | 0.183 | 11.8 | 1.43 | 0.384 | -0.632 | -0.165 | 0.813 | 0.244 | 5.52 | 16.65 | 1632 | -- | -- |
| 15.73 | 0.185 | 11.8 | 1.27 | 0.415 | -0.624 | -0.205 | -- | 0.187 | 5.01 | 14.83 | 2446 | -- | -- |
| 15.2 | 0.182 | 11.8 | 1.43 | 0.383 | -0.63 | -- | 0.811 | 0.244 | 5.55 | 16.7 | 1637 | -- | -- |
| 15.81 | 0.185 | 11.8 | 1.26 | 0.415 | -0.63 | -- | -- | 0.196 | 4.95 | 14.71 | 2428 | -- | -- |
| 16.33 | 0.188 | 11.8 | 1.38 | -- | -1.01 | -- | 0.929 | 0.253 | -- | 12.54 | 365 | -- | -- |
| 23.39 | 0.227 | 11.8 | 1.02 | 0.393 | -- | -0.158 | -- | 0.0653 | 5.6 | -- | -- | -- | -- |
| 23.45 | 0.227 | 11.8 | 1.02 | 0.392 | -- | -- | -- | 0.066 | 5.65 | -- | -- | -- | -- |
| 16.91 | 0.192 | 11.8 | 1.23 | -- | -0.983 | -- | -- | 0.212 | -- | 13.46 | 369 | -- | -- |
| 49.85 | 0.329 | 11.8 | -- | 0.336 | -0.262 | -- | -- | -0.0153 | 5.48 | 7.96 | 396 | -- | -- |
| 31.43 | 0.262 | 11.8 | 1.03 | -- | -- | -- | -- | 0.0754 | -- | -- | -- | -- | -- |
| 50.69 | 0.333 | 11.8 | -- | 0.408 | -- | -- | -- | -0.0472 | 5.54 | -- | -- | -- | -- |
| 53.1 | 0.339 | 11.8 | -- | -- | -0.46 | -- | -- | 0.0239 | -- | 24.2 | 290 | -- | -- |
| 59.36 | 0.36 | 11.9 | -- | -- | -- | -- | -- | -0.0387 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 14.64 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 12 |
| 4 | 14.69 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 12 |
| 5 | 14.75 | temperature | 30 | 270 | < th | dose dependent | rect. | 2 | 22 |
| 7 | 14.80 | radiation | 1 | 14400 | > th | dose independent | rect. | 17 | 2 |
| 22 | 14.87 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 20 |
| 23 | 14.87 | temperature | 30 | 270 | < th | dose dependent | rect. | 14 | 21 |
| 35 | 14.90 | radiation | 1 | 14400 | < th | dose independent | rect. | 17 | 9 |
| 38 | 14.91 | radiation | 1 | 14400 | < th | dose independent | rect. | 17 | 2 |
| 77 | 14.99 | radiation | 1 | 14400 | > th | dose independent | sin | 14 | NA |
| 78 | 14.99 | radiation | 1 | 14400 | < th | dose independent | sin | 14 | NA |
| 196 | 15.14 | radiation | 1 | 14400 | < th | dose independent | rect. | 10 | 19 |
| 220 | 15.17 | radiation | 1 | 14400 | < th | dose independent | rect. | 10 | 9 |
| 230 | 15.17 | radiation | 1 | 14400 | > th | dose independent | rect. | 10 | 19 |
| 255 | 15.18 | radiation | 40 | 14400 | < th | dose dependent | rect. | 18 | 4 |
| 257 | 15.18 | radiation | 20 | 4320 | < th | dose dependent | rect. | 18 | 8 |
| 272 | 15.19 | radiation | 40 | 14400 | < th | dose dependent | rect. | 18 | 8 |
| 275 | 15.20 | radiation | 1 | 14400 | > th | dose independent | rect. | 10 | 9 |
| 326 | 15.21 | temperature | 15 | 1440 | > th | dose dependent | rect. | 14 | 20 |
| 335 | 15.22 | radiation | 40 | 14400 | < th | dose dependent | rect. | 18 | 2 |
| 365 | 15.23 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 23 |
| 396 | 15.24 | temperature | 10 | 720 | > th | dose dependent | rect. | 16 | 23 |
| 397 | 15.24 | temperature | 15 | 270 | > th | dose dependent | rect. | 18 | 23 |
| 408 | 15.25 | radiation | 1 | 14400 | < th | dose independent | rect. | 16 | 23 |
| 500 | 15.28 | temperature | 15 | 1440 | > th | dose dependent | no | NA | NA |
| 507 | 15.28 | temperature | 15 | 1440 | > th | dose dependent | rect. | 6 | 22 |
| 517 | 15.28 | temperature | 15 | 1440 | > th | dose dependent | rect. | 20 | 23 |
| 518 | 15.28 | temperature | 15 | 1440 | > th | dose dependent | rect. | 23 | 23 |
| 520 | 15.29 | radiation | 1 | 14400 | < th | dose independent | no | NA | NA |
| 521 | 15.29 | radiation | 1 | 14400 | < th | dose independent | rect. | 4 | 18 |
| 532 | 15.29 | radiation | 1 | 14400 | < th | dose independent | rect. | 24 | 22 |
| 542 | 15.29 | radiation | 1 | 14400 | < th | dose dependent | rect. | 16 | 7 |
| 544 | 15.29 | radiation | 10 | 4320 | < th | dose dependent | rect. | 18 | 11 |
| 551 | 15.29 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 22 |
| 582 | 15.30 | radiation | 1 | 14400 | < th | dose independent | rect. | 4 | 15 |
| 627 | 15.30 | radiation | 1 | 14400 | < th | dose dependent | rect. | 16 | 3 |
| 640 | 15.30 | temperature | 15 | 1440 | > th | dose dependent | rect. | 15 | 12 |
| 694 | 15.31 | temperature | 15 | 1440 | > th | dose dependent | sin | 15 | NA |
| 712 | 15.31 | radiation | 1 | 14400 | < th | dose dependent | rect. | 16 | 13 |
| 753 | 15.32 | radiation | 1 | 14400 | > th | dose independent | no | NA | NA |
| 756 | 15.32 | radiation | 1 | 14400 | > th | dose independent | rect. | 4 | 15 |
| 813 | 15.32 | temperature | 15 | 1440 | > th | dose dependent | rect. | 16 | 10 |
| 867 | 15.33 | temperature | 30 | 1440 | < th | dose dependent | rect. | 16 | 17 |
| 972 | 15.36 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 3 |