Os02g0132600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein prenyltransferase domain containing protein.
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Os02g0132600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein prenyltransferase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 36.12 | 0.282 | 7.2 | 0.459 | 0.284 | -0.783 | -0.449 | 2.7 | 0.296 | 5.94 | 25.26 | 1353 | -- | -- |
| 39.26 | 0.292 | 7.27 | -0.243 | 0.237 | -0.509 | -0.388 | -- | 0.21 | 6.64 | 24.9 | 7656 | -- | -- |
| 36.55 | 0.282 | 7.2 | 0.447 | 0.281 | -0.776 | -- | 2.71 | 0.269 | 6.23 | 25.74 | 1353 | -- | -- |
| 39.61 | 0.293 | 7.27 | -0.251 | 0.245 | -0.504 | -- | -- | 0.209 | 6.9 | 25.01 | 7609 | -- | -- |
| 37.99 | 0.287 | 7.2 | 0.492 | -- | -0.917 | -- | 3.23 | 0.312 | -- | 25.27 | 1870 | -- | -- |
| 49.26 | 0.329 | 7.3 | -0.444 | 0.265 | -- | -0.403 | -- | 0.0586 | 6.71 | -- | -- | -- | -- |
| 49.62 | 0.33 | 7.3 | -0.449 | 0.264 | -- | -- | -- | 0.0603 | 7.12 | -- | -- | -- | -- |
| 42.56 | 0.304 | 7.27 | -0.241 | -- | -0.527 | -- | -- | 0.226 | -- | 25.66 | 7780 | -- | -- |
| 40.7 | 0.297 | 7.24 | -- | 0.278 | -0.591 | -- | -- | 0.308 | 6.63 | 22.14 | 8387 | -- | -- |
| 53.31 | 0.341 | 7.3 | -0.444 | -- | -- | -- | -- | 0.065 | -- | -- | -- | -- | -- |
| 54.94 | 0.347 | 7.29 | -- | 0.26 | -- | -- | -- | 0.11 | 7.23 | -- | -- | -- | -- |
| 43.85 | 0.308 | 7.25 | -- | -- | -0.597 | -- | -- | 0.293 | -- | 22.49 | 7805 | -- | -- |
| 58.51 | 0.357 | 7.29 | -- | -- | -- | -- | -- | 0.114 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 35.00 | temperature | 25 | 1440 | > th | dose dependent | rect. | 14 | 5 |
| 2 | 35.02 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 2 |
| 41 | 35.48 | humidity | 70 | 14400 | < th | dose dependent | rect. | 17 | 15 |
| 42 | 35.49 | humidity | 70 | 14400 | < th | dose dependent | rect. | 17 | 4 |
| 64 | 35.59 | temperature | 25 | 1440 | > th | dose dependent | sin | 19 | NA |
| 91 | 35.75 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 19 |
| 153 | 35.95 | humidity | 60 | 14400 | > th | dose independent | rect. | 17 | 6 |
| 160 | 35.96 | humidity | 60 | 14400 | > th | dose independent | rect. | 17 | 3 |
| 228 | 36.12 | humidity | 60 | 14400 | < th | dose independent | rect. | 16 | 4 |
| 337 | 36.26 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 340 | 36.27 | humidity | 70 | 14400 | < th | dose independent | rect. | 19 | 13 |
| 394 | 36.50 | humidity | 60 | 14400 | < th | dose dependent | rect. | 16 | 17 |
| 400 | 36.54 | temperature | 10 | 1440 | > th | dose dependent | rect. | 13 | 5 |
| 426 | 36.59 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 13 |
| 476 | 36.69 | humidity | 80 | 1440 | > th | dose independent | rect. | 6 | 15 |
| 597 | 36.97 | humidity | 80 | 1440 | < th | dose independent | sin | 0 | NA |
| 606 | 36.99 | humidity | 70 | 1440 | > th | dose dependent | rect. | 7 | 14 |
| 692 | 37.16 | humidity | 80 | 1440 | > th | dose independent | sin | 23 | NA |
| 783 | 37.34 | humidity | 70 | 1440 | > th | dose dependent | sin | 22 | NA |
| 794 | 37.36 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 23 |
| 795 | 37.37 | humidity | 70 | 14400 | > th | dose independent | rect. | 19 | 13 |
| 830 | 37.42 | wind | 3 | 43200 | > th | dose dependent | rect. | 3 | 14 |
| 836 | 37.43 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 8 |
| 846 | 37.44 | radiation | 1 | 1440 | < th | dose dependent | rect. | 7 | 23 |
| 859 | 37.46 | wind | 9 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 868 | 37.47 | wind | 1 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 875 | 37.48 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 978 | 37.58 | humidity | 50 | 1440 | > th | dose dependent | rect. | 15 | 6 |