Os02g0130300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, RING-type domain containing protein.
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Os02g0130300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, RING-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 26.98 | 0.244 | 9.57 | 0.253 | 0.406 | -0.902 | -0.421 | 0.062 | 0.214 | 0.707 | 18.89 | 290 | -- | -- |
| 26.97 | 0.242 | 9.57 | 0.245 | 0.397 | -0.907 | -0.426 | -- | 0.21 | 0.732 | 18.7 | 276 | -- | -- |
| 27.67 | 0.245 | 9.57 | 0.297 | 0.4 | -0.915 | -- | 0.237 | 0.223 | 0.852 | 18.62 | 280 | -- | -- |
| 27.73 | 0.245 | 9.57 | 0.257 | 0.41 | -0.892 | -- | -- | 0.21 | 0.897 | 18.5 | 285 | -- | -- |
| 32.46 | 0.267 | 9.54 | 0.421 | -- | -1.19 | -- | 0.745 | 0.297 | -- | 19.95 | 116 | -- | -- |
| 39.91 | 0.296 | 9.6 | 0.0376 | 0.636 | -- | -0.209 | -- | 0.0567 | 2.55 | -- | -- | -- | -- |
| 40.06 | 0.296 | 9.6 | 0.043 | 0.636 | -- | -- | -- | 0.0578 | 2.6 | -- | -- | -- | -- |
| 33.04 | 0.268 | 9.56 | 0.315 | -- | -1.17 | -- | -- | 0.26 | -- | 19.23 | 109 | -- | -- |
| 29.28 | 0.252 | 9.58 | -- | 0.431 | -0.78 | -- | -- | 0.167 | 1.15 | 19.2 | 286 | -- | -- |
| 63.76 | 0.373 | 9.6 | 0.07 | -- | -- | -- | -- | 0.0738 | -- | -- | -- | -- | -- |
| 40.11 | 0.296 | 9.6 | -- | 0.637 | -- | -- | -- | 0.0531 | 2.6 | -- | -- | -- | -- |
| 33.37 | 0.27 | 9.58 | -- | -- | -1.09 | -- | -- | 0.168 | -- | 24.1 | 20 | -- | -- |
| 63.89 | 0.373 | 9.6 | -- | -- | -- | -- | -- | 0.0661 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 23.98 | temperature | 15 | 720 | > th | dose dependent | sin | 5 | NA |
| 2 | 24.06 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 16 |
| 14 | 24.42 | temperature | 15 | 270 | > th | dose dependent | sin | 2 | NA |
| 52 | 24.85 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 13 |
| 58 | 24.92 | temperature | 30 | 720 | < th | dose dependent | sin | 5 | NA |
| 70 | 25.00 | temperature | 15 | 720 | > th | dose dependent | rect. | 3 | 8 |
| 179 | 25.72 | temperature | 20 | 270 | > th | dose dependent | rect. | 4 | 20 |
| 235 | 25.96 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 22 |
| 334 | 26.31 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 10 |
| 365 | 26.42 | temperature | 20 | 720 | > th | dose dependent | rect. | 6 | 3 |
| 412 | 26.54 | temperature | 10 | 10 | > th | dose dependent | sin | 0 | NA |
| 591 | 27.09 | temperature | 20 | 270 | > th | dose dependent | no | NA | NA |
| 630 | 27.20 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 4 |
| 677 | 27.32 | temperature | 25 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 755 | 27.47 | temperature | 25 | 10 | > th | dose dependent | rect. | 6 | 18 |
| 762 | 27.48 | temperature | 25 | 10 | > th | dose dependent | rect. | 4 | 20 |
| 797 | 27.54 | temperature | 25 | 10 | > th | dose dependent | rect. | 6 | 23 |
| 798 | 27.54 | temperature | 25 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 810 | 27.56 | temperature | 25 | 10 | > th | dose dependent | no | NA | NA |
| 832 | 27.57 | temperature | 25 | 10 | > th | dose dependent | rect. | 8 | 23 |
| 855 | 27.60 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 882 | 27.64 | temperature | 25 | 10 | > th | dose dependent | rect. | 23 | 21 |
| 988 | 27.73 | temperature | 25 | 10 | > th | dose dependent | rect. | 6 | 14 |