Os02g0129700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os02g0129700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 47.72 | 0.325 | 10.5 | -3.25 | 0.861 | -1.94 | -0.0183 | 12.8 | 0.396 | 3.13 | 29.9 | 4066 | -- | -- |
| 51.12 | 0.333 | 10.3 | -1.7 | 0.859 | -1.19 | -0.0945 | -- | 0.241 | 2.86 | 19.1 | 6124 | -- | -- |
| 47.65 | 0.321 | 10.5 | -3.27 | 0.856 | -1.96 | -- | 12.9 | 0.393 | 3.15 | 29.89 | 4026 | -- | -- |
| 50.53 | 0.331 | 10.3 | -1.57 | 0.868 | -1.01 | -- | -- | 0.239 | 2.85 | 19.35 | 6032 | -- | -- |
| 88.62 | 0.438 | 10.5 | -3.24 | -- | -2.09 | -- | 12.9 | 0.429 | -- | 29.89 | 3949 | -- | -- |
| 65.72 | 0.38 | 10.2 | -0.907 | 0.881 | -- | -0.052 | -- | 0.508 | 2.88 | -- | -- | -- | -- |
| 65.73 | 0.38 | 10.2 | -0.906 | 0.881 | -- | -- | -- | 0.508 | 2.88 | -- | -- | -- | -- |
| 92.6 | 0.448 | 10.3 | -1.41 | -- | -0.886 | -- | -- | 0.261 | -- | 21.1 | 3932 | -- | -- |
| 82.26 | 0.422 | 10.2 | -- | 0.858 | -0.335 | -- | -- | 0.512 | 2.83 | 22.5 | 1615 | -- | -- |
| 110.52 | 0.491 | 10.2 | -0.868 | -- | -- | -- | -- | 0.531 | -- | -- | -- | -- | -- |
| 87.36 | 0.437 | 10.2 | -- | 0.863 | -- | -- | -- | 0.609 | 2.87 | -- | -- | -- | -- |
| 101.78 | 0.47 | 10.2 | -- | -- | 0.552 | -- | -- | 0.751 | -- | 26.3 | 55 | -- | -- |
| 130.41 | 0.533 | 10.2 | -- | -- | -- | -- | -- | 0.627 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 46.93 | temperature | 15 | 720 | > th | dose dependent | rect. | 16 | 9 |
| 3 | 47.19 | temperature | 15 | 720 | > th | dose dependent | sin | 15 | NA |
| 5 | 47.32 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 4 |
| 6 | 47.32 | temperature | 15 | 720 | > th | dose dependent | rect. | 14 | 14 |
| 7 | 47.33 | temperature | 30 | 720 | < th | dose dependent | rect. | 15 | 12 |
| 14 | 47.39 | temperature | 30 | 720 | < th | dose dependent | rect. | 15 | 10 |
| 18 | 47.46 | temperature | 30 | 720 | < th | dose dependent | rect. | 16 | 7 |
| 39 | 47.66 | temperature | 30 | 720 | < th | dose dependent | sin | 15 | NA |
| 75 | 47.91 | wind | 5 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 82 | 47.96 | wind | 3 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 83 | 47.96 | wind | 5 | 14400 | < th | dose independent | rect. | 10 | 4 |
| 103 | 48.07 | wind | 5 | 14400 | < th | dose independent | rect. | 8 | 7 |
| 112 | 48.11 | wind | 5 | 14400 | > th | dose independent | rect. | 10 | 4 |
| 118 | 48.13 | wind | 5 | 14400 | > th | dose independent | rect. | 8 | 7 |
| 132 | 48.20 | wind | 3 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 139 | 48.22 | wind | 5 | 14400 | > th | dose independent | rect. | 11 | 1 |
| 143 | 48.25 | wind | 7 | 14400 | < th | dose independent | rect. | 9 | 1 |
| 180 | 48.50 | wind | 3 | 43200 | > th | dose independent | rect. | 20 | 3 |
| 214 | 48.75 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 11 |
| 219 | 48.78 | wind | 5 | 43200 | < th | dose dependent | rect. | 21 | 1 |
| 252 | 49.00 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 290 | 49.14 | temperature | 25 | 14400 | > th | dose independent | rect. | 8 | 7 |
| 291 | 49.14 | wind | 5 | 43200 | < th | dose dependent | rect. | 20 | 3 |
| 295 | 49.15 | temperature | 25 | 14400 | > th | dose independent | rect. | 7 | 9 |
| 302 | 49.16 | wind | 5 | 43200 | > th | dose independent | rect. | 10 | 17 |
| 315 | 49.19 | wind | 5 | 43200 | < th | dose independent | rect. | 10 | 18 |
| 332 | 49.23 | temperature | 25 | 14400 | < th | dose independent | rect. | 7 | 9 |
| 338 | 49.24 | wind | 3 | 14400 | > th | dose dependent | rect. | 10 | 2 |
| 345 | 49.26 | temperature | 25 | 14400 | < th | dose independent | rect. | 8 | 7 |
| 405 | 49.34 | wind | 3 | 43200 | < th | dose dependent | rect. | 9 | 1 |
| 418 | 49.36 | wind | 1 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 470 | 49.42 | temperature | 20 | 14400 | > th | dose dependent | rect. | 9 | 1 |
| 484 | 49.44 | temperature | 25 | 14400 | < th | dose independent | rect. | 10 | 2 |
| 498 | 49.46 | temperature | 25 | 14400 | > th | dose independent | sin | 1 | NA |
| 528 | 49.48 | wind | 3 | 43200 | > th | dose dependent | rect. | 9 | 6 |
| 546 | 49.50 | temperature | 30 | 4320 | < th | dose independent | rect. | 18 | 22 |
| 555 | 49.51 | temperature | 30 | 4320 | < th | dose independent | rect. | 14 | 22 |
| 565 | 49.53 | temperature | 25 | 14400 | < th | dose independent | sin | 1 | NA |
| 571 | 49.53 | temperature | 25 | 720 | < th | dose independent | rect. | 15 | 8 |
| 593 | 49.55 | wind | 5 | 43200 | > th | dose independent | sin | 23 | NA |
| 604 | 49.55 | radiation | 20 | 14400 | > th | dose dependent | rect. | 17 | 14 |
| 632 | 49.59 | wind | 5 | 43200 | < th | dose independent | sin | 23 | NA |
| 648 | 49.60 | humidity | 60 | 43200 | < th | dose independent | rect. | 20 | 16 |
| 651 | 49.60 | radiation | 20 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 700 | 49.63 | wind | 3 | 43200 | > th | dose dependent | rect. | 8 | 8 |
| 702 | 49.63 | wind | 5 | 43200 | > th | dose dependent | rect. | 6 | 11 |
| 714 | 49.64 | wind | 5 | 14400 | > th | dose independent | rect. | 24 | 17 |
| 786 | 49.68 | temperature | 30 | 4320 | < th | dose independent | rect. | 21 | 19 |
| 912 | 49.74 | wind | 5 | 43200 | < th | dose independent | rect. | 23 | 18 |
| 968 | 49.78 | wind | 5 | 43200 | > th | dose independent | sin | 16 | NA |
| 976 | 49.78 | wind | 5 | 43200 | > th | dose independent | rect. | 22 | 22 |