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Os02g0129300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.7 (0.0342) R2 : 0.907
β1 : -3.22 (0.125) R2dD : 0.141 R2D : 0.148
β2 : 3.35 (0.114) R2dC : 0.302 R2C : 0.586
β3 : -2.64 (0.126) R2dE : 0.155 R2E : 0.451
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.5 (0.0734) R2dN8 : 0.0128 R2N8 : 0.00659
σ : 0.638
deviance : 187.43
__
_____
C
peak time of C : 16.3
E
wheather : temperature
threshold : 18.68
memory length : 245
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 2.42
open length of G : 3.2

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
188.11 0.644 11.7 -3.21 3.37 -2.53 0.193 0.254 -0.478 16.3 18.9 257 2.35 3.05
187.67 0.638 11.7 -3.24 3.37 -2.6 0.0389 -- -0.489 16.3 18.69 250 2.39 3.18
188.09 0.639 11.7 -3.21 3.37 -2.54 -- 0.158 -0.484 16.3 18.89 255 2.35 3.03
187.43 0.638 11.7 -3.22 3.35 -2.64 -- -- -0.5 16.3 18.68 245 2.42 3.2
364.47 0.889 11.7 -3.45 -- -3.96 -- -0.0812 -0.262 -- 18 176 0.233 7.13
341.74 0.867 11.8 -3.44 4.96 -- 0.942 -- -0.701 16.8 -- -- -- --
344.05 0.869 11.8 -3.44 4.97 -- -- -- -0.696 16.8 -- -- -- --
359.43 0.883 11.7 -3.17 -- -4.07 -- -- -0.278 -- 17.9 187 0.169 7.05
457.1 0.996 11.6 -- 3.22 -2.86 -- -- -0.11 16.2 18.5 251 2.45 3.03
1649.27 1.9 11.8 -3.62 -- -- -- -- -0.825 -- -- -- -- --
655.49 1.2 11.7 -- 5.03 -- -- -- -0.313 16.7 -- -- -- --
606.58 1.15 11.6 -- -- -4.25 -- -- -0.0223 -- 18.52 208 0.00741 6.97
1995.74 2.09 11.7 -- -- -- -- -- -0.423 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 196.41 temperature 10.0 270 > th dose dependent rect. 1 5
7 199.58 temperature 20.0 270 > th dose independent rect. 2 3
8 202.20 humidity 80.0 270 > th dose independent rect. 2 3
9 203.14 humidity 60.0 270 > th dose dependent rect. 1 5
10 203.16 humidity 80.0 270 > th dose independent rect. 1 5
13 203.97 humidity 60.0 270 > th dose dependent rect. 2 3
14 204.21 temperature 10.0 270 > th dose dependent rect. 6 5
18 204.40 temperature 10.0 270 > th dose dependent rect. 7 3
23 205.36 temperature 20.0 270 > th dose independent rect. 1 5
27 205.71 temperature 20.0 90 > th dose independent rect. 4 3
29 206.19 precipitation 0.1 270 < th dose independent rect. 5 21
30 206.19 precipitation 0.1 270 < th dose dependent rect. 5 21
31 206.23 radiation 10.0 270 < th dose dependent rect. 2 4
32 206.63 precipitation 0.1 270 < th dose independent rect. 6 19
33 206.63 precipitation 0.1 270 < th dose dependent rect. 6 19
34 206.94 radiation 10.0 270 < th dose independent rect. 1 5
43 208.05 wind 9.0 270 < th dose independent rect. 5 21
48 208.37 wind 9.0 270 < th dose independent rect. 6 19
49 208.48 temperature 10.0 10 > th dose dependent rect. 2 6
51 208.55 radiation 1.0 270 < th dose dependent rect. 2 15
58 209.05 radiation 1.0 270 < th dose dependent rect. 2 12
76 209.56 wind 9.0 270 < th dose independent rect. 2 3
77 209.56 temperature 10.0 270 > th dose independent rect. 2 3
79 209.56 temperature 30.0 270 < th dose independent rect. 2 3
80 209.56 humidity 50.0 270 > th dose independent rect. 2 3
83 209.56 atmosphere 995.0 270 > th dose independent rect. 2 3
84 209.56 atmosphere 1010.0 270 < th dose independent rect. 2 3
89 209.56 temperature 10.0 270 > th dose independent rect. 5 21
91 209.80 temperature 10.0 270 > th dose independent rect. 1 5
93 209.80 temperature 30.0 270 < th dose independent rect. 1 5
94 209.80 humidity 50.0 270 > th dose independent rect. 1 5
97 209.80 atmosphere 995.0 270 > th dose independent rect. 1 5
98 209.80 atmosphere 1015.0 270 < th dose independent rect. 1 5
102 209.80 temperature 10.0 270 > th dose independent rect. 6 19
103 209.85 wind 9.0 270 < th dose independent rect. 1 5
105 209.91 radiation 1.0 270 < th dose independent rect. 2 14
107 210.17 radiation 1.0 270 < th dose independent rect. 2 12
149 212.17 radiation 1.0 270 > th dose independent sin 4 NA
152 212.32 precipitation 0.1 270 < th dose independent rect. 1 5
153 212.32 precipitation 0.1 270 < th dose dependent rect. 1 5
170 212.98 precipitation 0.1 270 < th dose independent rect. 2 3
171 212.98 precipitation 0.1 270 < th dose dependent rect. 2 3
174 213.07 radiation 40.0 90 < th dose independent rect. 13 18
196 213.35 wind 9.0 270 < th dose dependent rect. 2 4
207 213.86 radiation 1.0 270 < th dose dependent sin 3 NA
231 215.16 precipitation 0.1 90 < th dose independent rect. 4 3
232 215.16 precipitation 0.1 90 < th dose dependent rect. 4 3
252 216.43 temperature 15.0 90 > th dose independent rect. 7 6
262 216.99 wind 9.0 90 < th dose dependent rect. 4 3
282 217.58 radiation 1.0 270 < th dose independent sin 3 NA
286 217.69 wind 7.0 90 < th dose independent rect. 7 6
297 218.49 temperature 20.0 10 > th dose independent rect. 2 6
311 218.98 atmosphere 995.0 90 > th dose independent rect. 7 21
322 219.39 temperature 15.0 90 > th dose independent rect. 7 8
352 220.60 radiation 1.0 270 > th dose independent rect. 7 3
353 220.61 wind 7.0 270 < th dose independent rect. 21 14
354 220.67 radiation 1.0 270 > th dose independent rect. 6 5
364 221.05 wind 9.0 90 < th dose independent rect. 7 8
370 221.21 radiation 40.0 90 < th dose dependent rect. 13 18
394 221.96 radiation 1.0 90 > th dose independent rect. 7 8
405 222.11 precipitation 0.1 90 < th dose independent rect. 7 8
407 222.11 precipitation 0.1 90 < th dose dependent rect. 7 8
422 222.35 precipitation 0.1 90 < th dose independent rect. 7 6
423 222.35 precipitation 0.1 90 < th dose dependent rect. 7 6
430 222.49 temperature 15.0 90 > th dose independent rect. 13 18
432 222.52 wind 9.0 10 < th dose independent rect. 8 18
437 222.73 radiation 30.0 10 < th dose independent rect. 2 6
441 222.78 temperature 20.0 270 > th dose independent rect. 7 3
443 222.79 atmosphere 995.0 90 > th dose independent rect. 7 6
444 222.79 atmosphere 1015.0 90 < th dose independent rect. 7 6
448 222.83 atmosphere 995.0 90 > th dose independent rect. 7 8
460 223.24 atmosphere 1015.0 90 < th dose independent rect. 7 8
461 223.24 temperature 10.0 90 > th dose independent rect. 15 16
469 223.38 radiation 40.0 270 < th dose independent rect. 7 2
477 223.63 precipitation 0.1 10 < th dose independent rect. 8 18
479 223.63 precipitation 0.1 10 < th dose dependent rect. 8 18
480 223.67 wind 9.0 90 < th dose independent rect. 13 18
483 223.69 precipitation 0.1 270 < th dose independent rect. 21 14
485 223.69 precipitation 0.1 270 < th dose dependent rect. 21 14
487 223.73 humidity 60.0 270 > th dose independent rect. 6 5
492 223.81 wind 9.0 90 < th dose independent rect. 15 16
505 224.04 wind 1.0 90 > th dose independent rect. 7 6
506 224.04 atmosphere 1010.0 90 < th dose independent rect. 13 18
510 224.14 precipitation 0.1 10 < th dose independent rect. 8 20
511 224.14 precipitation 0.1 10 < th dose dependent rect. 8 20
515 224.17 radiation 40.0 90 < th dose independent rect. 15 16
517 224.23 wind 1.0 90 > th dose independent rect. 7 20
530 224.55 wind 9.0 10 < th dose independent rect. 2 6
531 224.55 temperature 10.0 10 > th dose independent rect. 2 6
533 224.55 temperature 30.0 10 < th dose independent rect. 2 6
534 224.55 humidity 50.0 10 > th dose independent rect. 2 6
536 224.55 atmosphere 995.0 10 > th dose independent rect. 2 6
537 224.55 atmosphere 1015.0 10 < th dose independent rect. 2 6
538 224.55 temperature 10.0 10 > th dose independent rect. 8 18
572 225.10 wind 7.0 270 < th dose independent rect. 7 3
579 225.20 radiation 10.0 10 < th dose independent rect. 4 4
591 225.23 radiation 40.0 90 < th dose dependent rect. 15 16
595 225.24 temperature 10.0 270 > th dose independent rect. 11 19
620 225.41 radiation 30.0 10 < th dose independent rect. 4 4
687 226.48 humidity 90.0 90 < th dose independent rect. 7 6
697 226.66 wind 1.0 90 > th dose independent rect. 7 8
734 227.29 precipitation 0.1 270 < th dose independent rect. 7 3
735 227.29 precipitation 0.1 270 < th dose dependent rect. 7 3
738 227.38 humidity 60.0 270 > th dose independent rect. 7 3
751 227.54 atmosphere 1015.0 270 < th dose independent rect. 11 10
752 227.55 humidity 50.0 270 > th dose independent rect. 21 14
763 227.62 humidity 50.0 270 > th dose independent rect. 6 19
810 228.01 atmosphere 995.0 270 > th dose independent rect. 7 3
811 228.01 atmosphere 1015.0 270 < th dose independent rect. 7 3
814 228.01 temperature 10.0 270 > th dose independent rect. 10 21
828 228.08 wind 9.0 270 < th dose independent rect. 11 19
843 228.41 temperature 10.0 270 > th dose independent rect. 11 10
844 228.41 temperature 10.0 270 > th dose independent rect. 21 14
845 228.41 atmosphere 995.0 270 > th dose independent rect. 21 14
858 228.58 atmosphere 995.0 270 > th dose dependent rect. 2 3
868 228.66 atmosphere 995.0 10 > th dose independent rect. 8 18
879 228.89 humidity 50.0 90 > th dose independent rect. 7 21
885 229.04 atmosphere 995.0 90 > th dose dependent rect. 4 3
896 229.17 humidity 50.0 90 > th dose independent rect. 7 8
907 229.28 wind 1.0 270 > th dose independent rect. 7 3
912 229.38 wind 9.0 1440 < th dose independent rect. 3 6
913 229.38 temperature 10.0 1440 > th dose independent rect. 3 6
916 229.38 humidity 50.0 1440 > th dose independent rect. 3 6
918 229.38 atmosphere 995.0 1440 > th dose independent rect. 3 6
920 229.38 temperature 10.0 1440 > th dose independent rect. 9 18
978 229.93 atmosphere 1015.0 90 < th dose dependent rect. 4 3
979 229.96 atmosphere 1010.0 90 < th dose independent rect. 15 16