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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0129100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.01 (0.0297) R2 : 0.267
β1 : -0.153 (0.109) R2dD : 0.00351 R2D : 0.000424
β2 : -- (--) R2dC : -- R2C : --
β3 : 2.29 (0.358) R2dE : 0.07 R2E : 0.0673
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -10.2 (1.09) R2dD*E : 0.148 R2D*E : 0.152
γ1 : 0.281 (0.0634) R2dN8 : 0.0425 R2N8 : 0.0282
σ : 0.556
deviance : 141.17
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_____
C
peak time of C : --
E
wheather : temperature
threshold : 23.3
memory length : 15
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 7.98
open length of G : 1.71

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
140.49 0.557 3.01 -0.163 0.137 2.26 0.208 -10.5 0.279 8.54 23.3 15 7.98 1.71
165.83 0.604 3.02 -0.236 0.139 2.41 -0.971 -- 0.254 5.72 23.62 14 7.88 1.88
140.07 0.555 3.01 -0.157 0.145 2.19 -- -10.1 0.278 7.48 23.3 15 7.98 1.71
167.6 0.603 3.02 -0.239 0.152 2.44 -- -- 0.258 7.42 23.43 21 7.89 1.57
141.17 0.556 3.01 -0.153 -- 2.29 -- -10.2 0.281 -- 23.3 15 7.98 1.71
180.85 0.63 3.02 -0.259 0.225 -- -1.03 -- 0.223 6.18 -- -- -- --
183.07 0.634 3.02 -0.267 0.233 -- -- -- 0.228 7.49 -- -- -- --
168.76 0.605 3.02 -0.234 -- 2.52 -- -- 0.263 -- 23.54 22 7.88 1.57
169.09 0.606 3.01 -- 0.147 2.47 -- -- 0.285 7.52 23.45 20 7.89 1.61
185.96 0.637 3.03 -0.264 -- -- -- -- 0.232 -- -- -- -- --
184.95 0.636 3.01 -- 0.231 -- -- -- 0.258 7.57 -- -- -- --
167.16 0.602 3.02 -- -- 2.69 -- -- 0.281 -- 22.8 74 6.67 2.19
187.8 0.64 3.02 -- -- -- -- -- 0.261 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 145.81 temperature 25 10 < th dose dependent rect. 8 1
15 149.06 humidity 70 10 < th dose dependent rect. 18 14
17 149.73 humidity 80 90 < th dose dependent rect. 24 7
19 149.87 humidity 70 10 < th dose independent rect. 18 14
22 149.91 radiation 30 30 > th dose dependent rect. 7 2
83 149.94 humidity 80 90 < th dose dependent rect. 21 11
90 149.95 humidity 70 90 < th dose independent rect. 19 13
116 149.98 humidity 70 10 < th dose independent rect. 7 1
177 149.98 humidity 80 90 < th dose dependent rect. 6 1
178 149.98 humidity 70 10 < th dose dependent rect. 7 1
240 149.99 radiation 20 90 > th dose independent rect. 6 1
406 150.70 humidity 70 10 < th dose independent rect. 16 17
419 150.85 radiation 1 10 > th dose dependent rect. 7 1
639 154.75 temperature 20 90 < th dose independent rect. 6 1
646 155.40 wind 3 10 > th dose independent rect. 7 1
725 157.48 atmosphere 1005 10 > th dose dependent rect. 7 1
776 159.44 temperature 20 270 < th dose dependent rect. 4 1
783 159.66 wind 1 30 > th dose independent rect. 8 23
803 160.04 temperature 25 10 < th dose independent rect. 7 1
825 160.41 radiation 1 270 > th dose independent rect. 4 1
869 161.11 humidity 70 30 < th dose independent sin 11 NA
873 161.22 radiation 30 30 < th dose independent sin 11 NA
879 161.26 temperature 20 270 < th dose independent rect. 4 3
904 161.61 humidity 70 30 > th dose independent sin 11 NA
972 163.12 wind 1 10 > th dose dependent rect. 7 1
986 163.62 wind 5 30 < th dose independent rect. 7 1
989 163.79 wind 1 30 < th dose independent rect. 2 1
997 164.02 wind 3 30 < th dose dependent rect. 2 1