FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0127800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Concanavalin A-like lectin/glucanase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.93 (0.0146) R2 : 0.0118
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0719 (0.0307) R2dN8 : 0.0153 R2N8 : 0.0118
σ : 0.275
deviance : 34.7
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
33.41 0.272 2.94 -0.00481 0.0254 -0.194 -0.2 0.583 0.0696 0.711 1.003 16 -- --
33.5 0.272 2.93 0.0197 0.0268 -0.147 -0.252 -- 0.0765 1.38 1.003 16 -- --
33.44 0.271 2.94 0.00265 0.0289 -0.179 -- 0.526 0.0719 2.95 1.1 16 -- --
33.74 0.272 2.93 0.0292 0.0341 -0.137 -- -- 0.0774 3.26 1.1 16 -- --
33.48 0.271 2.94 0.00175 -- -0.193 -- 0.538 0.0726 -- 1.1 16 -- --
34.18 0.274 2.93 0.0388 0.071 -- -0.222 -- 0.074 2.72 -- -- -- --
34.33 0.274 2.93 0.0441 0.0749 -- -- -- 0.0751 3.76 -- -- -- --
33.8 0.272 2.93 0.0288 -- -0.152 -- -- 0.0785 -- 1 16 -- --
33.76 0.272 2.93 -- 0.0339 -0.14 -- -- 0.0743 3.23 1.076 16 -- --
34.64 0.275 2.93 0.0472 -- -- -- -- 0.0771 -- -- -- -- --
34.38 0.274 2.93 -- 0.0758 -- -- -- 0.0702 3.76 -- -- -- --
33.82 0.272 2.93 -- -- -0.155 -- -- 0.0753 -- 1 16 -- --
34.7 0.275 2.93 -- -- -- -- -- 0.0719 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 31.67 wind 9.0 4320 < th dose independent rect. 23 1
3 31.68 temperature 10.0 1440 > th dose independent rect. 23 1
6 31.68 temperature 30.0 1440 < th dose independent rect. 23 1
10 31.68 humidity 50.0 1440 > th dose independent rect. 23 1
20 31.68 atmosphere 995.0 1440 > th dose independent rect. 23 1
21 31.68 radiation 1.0 1440 < th dose independent rect. 23 1
41 31.68 wind 9.0 10 < th dose independent rect. 3 23
42 31.68 temperature 10.0 1440 > th dose independent rect. 24 23
45 31.68 radiation 1.0 1440 < th dose dependent rect. 23 1
51 31.71 temperature 25.0 30 > th dose independent rect. 22 1
52 31.71 humidity 90.0 30 < th dose independent rect. 22 1
53 31.71 temperature 25.0 30 > th dose dependent rect. 22 1
54 31.71 atmosphere 1005.0 30 > th dose dependent rect. 2 1
55 31.71 atmosphere 1005.0 30 > th dose dependent rect. 22 1
56 31.72 wind 1.0 30 < th dose independent rect. 2 1
57 31.72 atmosphere 1005.0 30 > th dose independent rect. 22 1
60 31.73 temperature 15.0 30 > th dose independent rect. 3 23
61 31.73 wind 3.0 30 < th dose dependent rect. 2 1
62 31.73 humidity 90.0 30 < th dose dependent rect. 22 1
68 31.74 atmosphere 1005.0 30 > th dose independent rect. 2 1
72 31.74 temperature 10.0 30 > th dose dependent rect. 2 1
75 31.74 temperature 10.0 30 > th dose dependent rect. 22 1
82 31.75 temperature 10.0 30 > th dose independent rect. 2 1
86 31.75 temperature 25.0 30 < th dose independent rect. 2 1
88 31.75 humidity 50.0 30 > th dose independent rect. 2 1
93 31.75 atmosphere 995.0 30 > th dose independent rect. 2 1
95 31.75 atmosphere 1010.0 30 < th dose independent rect. 2 1
97 31.75 radiation 1.0 30 < th dose independent rect. 2 1
102 31.75 precipitation 0.1 30 < th dose independent rect. 2 1
103 31.75 precipitation 0.1 30 < th dose independent rect. 22 1
105 31.75 humidity 50.0 30 > th dose dependent rect. 2 1
110 31.75 radiation 1.0 30 < th dose dependent rect. 2 1
115 31.75 precipitation 0.1 30 < th dose dependent rect. 2 1
116 31.75 precipitation 0.1 30 < th dose dependent rect. 22 1
117 31.76 wind 1.0 30 > th dose independent rect. 22 1
119 31.76 wind 3.0 30 < th dose independent rect. 22 1
123 31.76 temperature 10.0 30 > th dose independent rect. 22 1
125 31.76 temperature 30.0 30 < th dose independent rect. 22 1
126 31.76 humidity 50.0 30 > th dose independent rect. 22 1
132 31.76 atmosphere 1010.0 30 < th dose independent rect. 22 1
134 31.76 radiation 1.0 30 < th dose independent rect. 22 1
139 31.76 temperature 10.0 30 > th dose independent rect. 23 23
141 31.76 wind 7.0 30 < th dose dependent rect. 22 1
143 31.76 radiation 1.0 30 < th dose dependent rect. 22 1
150 31.78 wind 9.0 30 < th dose independent rect. 23 23
151 31.78 temperature 30.0 30 < th dose dependent rect. 2 1
152 31.78 humidity 50.0 30 > th dose dependent rect. 22 1
153 31.78 atmosphere 1015.0 30 < th dose dependent rect. 2 1
154 31.79 wind 1.0 30 > th dose dependent rect. 22 1
165 31.83 atmosphere 1015.0 30 < th dose dependent rect. 22 1
166 31.84 wind 1.0 30 > th dose independent rect. 2 1
173 31.85 temperature 30.0 30 < th dose dependent rect. 22 1
228 31.96 atmosphere 1000.0 30 > th dose independent rect. 3 23
231 31.97 wind 9.0 720 < th dose independent rect. 3 8
263 32.01 humidity 50.0 720 > th dose independent rect. 3 8
264 32.01 wind 1.0 10 > th dose independent rect. 23 23
268 32.03 atmosphere 1015.0 720 < th dose independent rect. 3 8
276 32.06 precipitation 0.1 30 < th dose independent rect. 3 23
279 32.06 precipitation 0.1 30 < th dose dependent rect. 3 23
280 32.08 temperature 10.0 720 > th dose independent rect. 3 8
281 32.08 atmosphere 995.0 720 > th dose independent rect. 3 8
282 32.08 temperature 10.0 720 > th dose independent rect. 11 16
293 32.19 temperature 10.0 720 > th dose independent rect. 15 8
294 32.19 temperature 10.0 720 > th dose independent rect. 23 16
295 32.20 temperature 25.0 270 > th dose independent rect. 19 9
308 32.24 radiation 1.0 4320 < th dose dependent rect. 3 1
316 32.25 wind 9.0 1440 < th dose independent rect. 3 1
317 32.25 temperature 10.0 1440 > th dose independent rect. 3 1
320 32.25 temperature 30.0 1440 < th dose independent rect. 3 1
324 32.25 humidity 50.0 1440 > th dose independent rect. 3 1
333 32.25 atmosphere 995.0 1440 > th dose independent rect. 3 1
334 32.25 radiation 1.0 1440 < th dose independent rect. 3 1
354 32.25 precipitation 0.1 720 < th dose independent rect. 15 8
355 32.25 temperature 10.0 1440 > th dose independent rect. 4 23
370 32.25 temperature 20.0 30 > th dose dependent rect. 22 5
371 32.25 precipitation 0.1 720 < th dose dependent rect. 15 8
386 32.36 precipitation 0.1 720 < th dose independent rect. 3 8
387 32.36 atmosphere 995.0 30 > th dose independent rect. 23 23
389 32.36 precipitation 0.1 720 < th dose dependent rect. 3 8
392 32.39 temperature 25.0 270 > th dose independent rect. 22 6
393 32.39 precipitation 0.1 720 < th dose independent rect. 11 16
395 32.39 precipitation 0.1 720 < th dose dependent rect. 11 16
398 32.40 radiation 40.0 720 < th dose independent rect. 15 8
406 32.44 atmosphere 995.0 720 > th dose independent rect. 23 16
407 32.45 precipitation 0.1 720 < th dose independent rect. 23 16
408 32.45 precipitation 0.1 720 < th dose dependent rect. 23 16
420 32.51 precipitation 0.1 30 < th dose independent rect. 23 23
422 32.51 precipitation 0.1 30 < th dose dependent rect. 23 23
431 32.56 humidity 50.0 30 > th dose independent rect. 3 23
442 32.60 atmosphere 995.0 720 > th dose independent rect. 15 8
446 32.62 wind 9.0 720 < th dose independent rect. 23 16
454 32.66 humidity 50.0 720 > th dose independent rect. 23 16
455 32.67 precipitation 0.1 1440 < th dose independent rect. 23 1
457 32.67 precipitation 0.1 1440 < th dose dependent rect. 23 1
463 32.71 wind 1.0 720 > th dose independent rect. 15 8
464 32.71 wind 9.0 720 < th dose independent rect. 15 8
479 32.74 temperature 25.0 270 < th dose independent rect. 21 10
489 32.77 wind 1.0 10 > th dose independent rect. 12 23
497 32.79 humidity 90.0 90 < th dose independent rect. 2 1
501 32.79 wind 5.0 30 < th dose dependent rect. 22 5
513 32.82 humidity 50.0 30 > th dose independent rect. 23 23
516 32.82 radiation 20.0 10 < th dose dependent rect. 3 23
521 32.83 atmosphere 995.0 30 > th dose dependent rect. 3 8
522 32.84 temperature 25.0 270 > th dose independent sin 11 NA
527 32.85 wind 1.0 30 < th dose independent rect. 24 3
528 32.85 atmosphere 1000.0 30 > th dose independent rect. 3 8
539 32.87 humidity 80.0 4320 < th dose dependent rect. 22 1
540 32.87 temperature 10.0 90 > th dose dependent rect. 3 18
565 32.90 wind 7.0 90 < th dose independent rect. 3 18
569 32.90 radiation 10.0 10 < th dose independent rect. 3 23
582 32.91 atmosphere 1015.0 30 < th dose independent rect. 3 23
591 32.92 wind 9.0 720 < th dose independent rect. 11 16
598 32.93 wind 1.0 10 > th dose independent rect. 24 11
610 32.94 humidity 90.0 270 < th dose independent rect. 19 9
615 32.94 temperature 10.0 270 > th dose dependent rect. 19 8
641 32.98 wind 3.0 30 < th dose independent rect. 22 5
642 32.98 atmosphere 1005.0 90 > th dose independent rect. 21 6
665 32.99 radiation 20.0 10 < th dose dependent rect. 23 23
673 33.01 temperature 25.0 270 < th dose independent sin 11 NA
703 33.03 wind 7.0 270 < th dose independent rect. 3 15
705 33.03 wind 1.0 10 < th dose independent rect. 5 22
706 33.03 radiation 10.0 10 < th dose independent rect. 23 23
735 33.06 atmosphere 1015.0 90 < th dose independent rect. 21 6
741 33.06 temperature 15.0 90 > th dose independent rect. 3 18
750 33.07 atmosphere 1000.0 90 > th dose independent rect. 3 18
759 33.08 temperature 25.0 30 > th dose dependent rect. 5 1
765 33.08 atmosphere 995.0 90 > th dose dependent rect. 21 6
773 33.09 atmosphere 1000.0 90 > th dose independent rect. 23 10
775 33.09 radiation 40.0 30 < th dose independent rect. 11 16
776 33.09 wind 1.0 10 > th dose independent rect. 14 19
791 33.09 temperature 10.0 30 > th dose dependent rect. 3 23
806 33.10 atmosphere 1015.0 30 < th dose independent rect. 23 23
830 33.11 radiation 30.0 30 < th dose independent rect. 3 8
833 33.11 wind 1.0 10 > th dose independent rect. 14 17
835 33.11 humidity 90.0 270 < th dose independent rect. 19 17
859 33.12 atmosphere 1000.0 90 < th dose dependent rect. 4 3
861 33.12 atmosphere 995.0 90 > th dose dependent rect. 3 18
862 33.12 wind 9.0 30 < th dose dependent rect. 3 23
864 33.13 atmosphere 1015.0 1440 < th dose independent rect. 3 1
865 33.13 atmosphere 1000.0 90 < th dose independent rect. 4 1
866 33.13 atmosphere 1000.0 10 < th dose independent rect. 5 1
877 33.13 humidity 80.0 30 > th dose independent rect. 22 5
887 33.13 atmosphere 1000.0 90 < th dose dependent rect. 4 1
888 33.13 atmosphere 1000.0 10 < th dose dependent rect. 5 1
916 33.14 precipitation 0.1 90 < th dose independent rect. 21 6
923 33.14 atmosphere 1015.0 720 < th dose independent rect. 23 16
931 33.14 precipitation 0.1 90 < th dose dependent rect. 21 6
935 33.14 radiation 1.0 270 < th dose dependent rect. 5 22
940 33.15 temperature 10.0 90 > th dose independent rect. 21 6
941 33.15 temperature 30.0 90 < th dose independent rect. 21 6
942 33.15 humidity 50.0 90 > th dose independent rect. 21 6
945 33.15 atmosphere 995.0 90 > th dose independent rect. 21 6
947 33.15 radiation 1.0 90 < th dose independent rect. 21 6
955 33.15 atmosphere 1015.0 90 < th dose independent rect. 3 18
959 33.15 atmosphere 1000.0 30 > th dose independent rect. 12 23
965 33.15 radiation 1.0 90 < th dose dependent rect. 21 6
991 33.16 atmosphere 1015.0 30 < th dose independent rect. 11 16
992 33.16 wind 1.0 10 > th dose independent rect. 16 17