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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0127500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3 (0.0243) R2 : 0.176
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 0.816 (0.0828) R2dE : 0.183 R2E : 0.163
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.119 (0.052) R2dN8 : 0.0128 R2N8 : -0.00674
σ : 0.455
deviance : 95.61
__
_____
C
peak time of C : --
E
wheather : atmosphere
threshold : 998.9
memory length : 6469
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
90.87 0.448 2.97 0.188 0.115 0.499 0.368 1.93 0.111 11.7 998.8 6476 -- --
93.96 0.451 2.99 0.103 0.106 0.781 0.34 -- 0.114 11.8 999 6469 -- --
91.2 0.445 2.97 0.199 0.122 0.547 -- 1.95 0.113 10.3 998.6 6388 -- --
94.44 0.453 2.99 0.114 0.111 0.79 -- -- 0.126 10.1 999 6469 -- --
92.08 0.447 2.98 0.199 -- 0.532 -- 2.02 0.112 -- 998.6 6388 -- --
112.95 0.498 3.01 0.236 0.12 -- 0.353 -- 0.0463 11.5 -- -- -- --
113.4 0.499 3.01 0.249 0.126 -- -- -- 0.0468 10.3 -- -- -- --
95.3 0.455 2.99 0.111 -- 0.8 -- -- 0.13 -- 999 6469 -- --
94.76 0.453 2.99 -- 0.119 0.815 -- -- 0.123 10.2 999 6469 -- --
114.37 0.5 3.01 0.247 -- -- -- -- 0.0464 -- -- -- -- --
115.03 0.502 3.02 -- 0.125 -- -- -- 0.0191 10.1 -- -- -- --
95.61 0.455 3 -- -- 0.816 -- -- 0.119 -- 998.9 6469 -- --
115.98 0.503 3.02 -- -- -- -- -- 0.0191 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 85.52 wind 7 4320 < th dose independent rect. 18 10
3 86.13 wind 7 4320 > th dose dependent rect. 18 10
4 86.22 wind 7 4320 > th dose independent rect. 18 10
5 86.24 temperature 20 720 < th dose independent rect. 18 2
6 86.26 wind 7 4320 < th dose independent rect. 18 3
8 86.31 temperature 20 720 < th dose independent rect. 8 12
9 86.34 wind 5 4320 > th dose dependent rect. 20 3
10 86.35 wind 9 4320 > th dose dependent rect. 20 8
15 86.44 humidity 80 10 < th dose independent rect. 20 11
26 86.64 wind 9 4320 > th dose independent rect. 20 8
31 86.69 wind 7 4320 > th dose independent rect. 18 3
35 86.75 humidity 90 1440 < th dose dependent rect. 3 1
66 87.16 wind 9 4320 > th dose dependent rect. 20 1
143 87.74 wind 5 4320 > th dose independent rect. 21 1
144 87.75 humidity 80 270 < th dose independent rect. 1 2
148 87.82 humidity 80 270 < th dose dependent rect. 1 2
158 87.95 humidity 80 270 < th dose independent rect. 23 5
159 87.95 humidity 80 90 < th dose independent rect. 23 7
170 88.11 humidity 80 90 < th dose independent rect. 1 5
179 88.19 humidity 80 270 < th dose dependent rect. 23 6
183 88.26 humidity 80 270 < th dose dependent rect. 21 9
200 88.66 atmosphere 995 14400 < th dose independent rect. 16 1
207 88.68 atmosphere 995 14400 < th dose dependent rect. 16 1
213 88.70 atmosphere 995 14400 < th dose independent rect. 18 1
216 88.70 atmosphere 995 14400 < th dose dependent rect. 18 1
231 88.79 atmosphere 995 14400 > th dose independent rect. 16 1
241 88.88 humidity 90 1440 < th dose dependent rect. 24 4
281 89.07 atmosphere 995 14400 > th dose independent rect. 13 6
297 89.10 atmosphere 995 14400 > th dose independent rect. 10 9
302 89.12 atmosphere 995 14400 > th dose independent rect. 8 11
303 89.12 humidity 80 10 < th dose dependent rect. 2 5
416 89.46 humidity 80 10 < th dose independent rect. 2 4
431 89.63 humidity 80 1440 < th dose independent rect. 22 1
441 89.71 humidity 90 1440 < th dose dependent rect. 23 7
455 89.79 temperature 20 1440 > th dose independent rect. 18 3
489 89.94 wind 5 4320 > th dose dependent rect. 17 17
503 90.10 temperature 20 1440 > th dose independent rect. 18 1
506 90.10 radiation 1 14400 < th dose dependent rect. 19 6
527 90.31 temperature 20 4320 < th dose independent rect. 21 1
560 90.45 humidity 80 10 < th dose dependent rect. 20 11
580 90.61 wind 7 4320 < th dose independent rect. 8 1
657 90.89 temperature 20 4320 > th dose independent rect. 20 2
668 90.92 atmosphere 995 14400 > th dose independent rect. 19 21
676 90.96 atmosphere 995 14400 < th dose dependent sin 0 NA
710 91.06 atmosphere 995 14400 > th dose independent sin 4 NA
712 91.07 radiation 1 14400 < th dose dependent rect. 23 1
754 91.14 humidity 90 1440 < th dose dependent rect. 24 1
773 91.17 atmosphere 995 14400 < th dose independent sin 3 NA
793 91.20 atmosphere 995 14400 > th dose independent sin 22 NA
808 91.22 atmosphere 995 14400 < th dose independent sin 22 NA
841 91.31 wind 7 1440 > th dose independent rect. 8 1
852 91.36 temperature 20 720 > th dose independent rect. 13 8
876 91.43 wind 7 4320 < th dose independent rect. 18 16
885 91.46 temperature 20 1440 > th dose independent rect. 15 6
971 91.52 atmosphere 995 14400 > th dose independent no NA NA
999 91.52 atmosphere 995 14400 > th dose independent rect. 12 23
1000 91.52 atmosphere 995 14400 > th dose independent rect. 14 23