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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0126500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein prenyltransferase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.14 (0.0289) R2 : 0.15
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.647 (0.0755) R2dC : 0.137 R2C : 0.135
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.153 (0.0607) R2dN8 : 0.0153 R2N8 : 0.0135
σ : 0.544
deviance : 135.41
__
_____
C
peak time of C : 17.5
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
123.95 0.523 3.12 0.335 0.893 0.368 1.18 0.1 -0.0418 17.3 90 261 -- --
123.98 0.519 3.12 0.341 0.89 0.367 1.11 -- -0.0413 17.3 90.1 261 -- --
126.41 0.524 3.13 0.356 0.875 0.323 -- -0.229 -0.0647 17.3 89.2 272 -- --
126.77 0.524 3.12 0.342 0.885 0.331 -- -- -0.0537 17.3 89.01 268 -- --
136.88 0.545 3.17 0.431 -- -0.67 -- -0.0159 -0.221 -- 72 453 -- --
129.03 0.533 3.13 0.406 0.648 -- 0.927 -- -0.112 17.5 -- -- -- --
131.14 0.536 3.13 0.403 0.653 -- -- -- -0.108 17.5 -- -- -- --
135.25 0.542 3.13 0.322 -- -0.622 -- -- -0.153 -- 70 410 -- --
129.79 0.531 3.13 -- 0.912 0.373 -- -- -0.0837 17.3 89.42 273 -- --
153.35 0.579 3.12 0.381 -- -- -- -- -0.124 -- -- -- -- --
135.41 0.544 3.14 -- 0.647 -- -- -- -0.153 17.5 -- -- -- --
137.97 0.547 3.14 -- -- -0.638 -- -- -0.19 -- 70.25 407 -- --
157.17 0.585 3.13 -- -- -- -- -- -0.166 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 116.81 humidity 50.0 270 > th dose independent rect. 16 21
2 117.05 radiation 1.0 10 > th dose independent rect. 16 14
4 117.16 wind 3.0 270 > th dose independent rect. 12 5
5 117.19 radiation 10.0 270 < th dose independent rect. 16 10
7 117.28 atmosphere 995.0 270 > th dose dependent rect. 13 4
9 117.35 humidity 50.0 270 > th dose independent rect. 6 19
10 117.36 humidity 60.0 270 > th dose independent rect. 17 9
15 117.59 atmosphere 995.0 270 > th dose independent rect. 13 4
22 117.75 temperature 15.0 270 > th dose independent rect. 17 8
24 117.80 temperature 10.0 30 > th dose dependent rect. 14 6
25 117.81 atmosphere 1015.0 270 < th dose independent rect. 17 20
26 117.82 atmosphere 1015.0 270 < th dose independent rect. 17 8
28 117.82 temperature 10.0 270 > th dose dependent rect. 13 4
31 117.88 humidity 50.0 270 > th dose independent rect. 6 17
32 117.89 wind 9.0 270 < th dose independent rect. 13 4
33 117.90 wind 9.0 270 < th dose independent rect. 17 20
35 117.93 precipitation 0.1 270 < th dose independent rect. 13 4
36 117.93 precipitation 0.1 270 < th dose dependent rect. 13 4
37 117.94 temperature 10.0 270 > th dose independent rect. 13 4
39 117.94 atmosphere 1010.0 270 < th dose independent rect. 13 4
41 117.94 temperature 10.0 270 > th dose independent rect. 17 20
45 117.99 precipitation 0.1 270 < th dose independent rect. 17 20
46 117.99 precipitation 0.1 270 < th dose dependent rect. 17 20
47 118.01 temperature 30.0 270 < th dose independent rect. 17 8
51 118.04 radiation 20.0 270 < th dose dependent rect. 16 10
53 118.07 humidity 70.0 10 > th dose independent rect. 18 10
57 118.11 radiation 1.0 10 > th dose independent sin 13 NA
60 118.13 humidity 90.0 270 < th dose independent rect. 17 20
66 118.18 precipitation 0.1 270 < th dose independent rect. 2 15
68 118.18 precipitation 0.1 270 < th dose dependent rect. 2 15
72 118.24 precipitation 0.1 270 < th dose independent rect. 17 9
74 118.24 precipitation 0.1 270 < th dose dependent rect. 17 9
76 118.27 atmosphere 995.0 270 > th dose independent rect. 2 15
77 118.27 atmosphere 1015.0 10 < th dose independent rect. 20 18
88 118.34 humidity 50.0 270 > th dose independent rect. 5 21
102 118.40 wind 9.0 270 < th dose independent rect. 2 15
109 118.42 wind 9.0 270 < th dose independent rect. 17 9
114 118.42 temperature 10.0 270 > th dose independent rect. 2 15
116 118.42 atmosphere 1015.0 270 < th dose independent rect. 2 15
126 118.46 temperature 10.0 270 > th dose dependent rect. 14 2
128 118.47 temperature 15.0 10 > th dose independent rect. 20 18
156 118.66 humidity 70.0 270 > th dose dependent rect. 1 5
160 118.69 radiation 20.0 10 < th dose independent rect. 15 18
164 118.71 humidity 90.0 90 < th dose independent rect. 20 18
172 118.74 wind 1.0 270 > th dose dependent rect. 12 5
176 118.75 humidity 70.0 270 > th dose dependent rect. 23 7
177 118.76 precipitation 0.1 10 < th dose independent rect. 14 6
178 118.76 precipitation 0.1 10 < th dose dependent rect. 14 6
179 118.77 precipitation 0.1 270 < th dose independent rect. 14 2
180 118.77 precipitation 0.1 270 < th dose dependent rect. 14 2
184 118.80 temperature 10.0 270 > th dose independent rect. 14 2
186 118.80 atmosphere 1010.0 270 < th dose independent rect. 14 2
189 118.80 temperature 10.0 270 > th dose independent rect. 16 22
191 118.82 humidity 90.0 270 < th dose independent rect. 13 4
192 118.82 wind 1.0 270 > th dose independent rect. 17 20
198 118.83 temperature 10.0 90 > th dose dependent rect. 6 8
202 118.84 atmosphere 995.0 270 > th dose independent rect. 17 20
205 118.85 wind 9.0 270 < th dose independent rect. 14 2
206 118.85 wind 9.0 10 < th dose independent rect. 20 18
208 118.86 radiation 40.0 10 < th dose independent rect. 14 6
212 118.87 radiation 40.0 90 < th dose independent rect. 14 17
213 118.88 radiation 30.0 90 < th dose independent rect. 15 2
233 118.97 temperature 10.0 10 > th dose independent rect. 14 6
235 118.97 atmosphere 1010.0 10 < th dose independent rect. 14 6
237 118.97 atmosphere 995.0 270 > th dose independent rect. 13 17
239 118.97 atmosphere 995.0 10 > th dose independent rect. 20 18
240 118.97 wind 9.0 270 < th dose independent rect. 16 22
249 119.00 wind 9.0 10 < th dose independent rect. 14 6
255 119.03 wind 1.0 10 > th dose independent rect. 14 6
271 119.07 precipitation 0.1 270 < th dose independent rect. 16 22
272 119.07 precipitation 0.1 270 < th dose dependent rect. 16 22
281 119.10 precipitation 0.1 30 < th dose independent rect. 20 18
283 119.10 precipitation 0.1 30 < th dose dependent rect. 20 18
295 119.12 temperature 10.0 90 > th dose dependent rect. 20 18
334 119.22 temperature 20.0 30 > th dose independent rect. 9 5
335 119.22 humidity 80.0 270 > th dose independent rect. 1 5
340 119.22 temperature 30.0 270 < th dose independent rect. 6 19
351 119.24 humidity 50.0 10 > th dose independent rect. 20 18
363 119.26 temperature 10.0 270 > th dose dependent rect. 18 18
369 119.28 temperature 10.0 1440 > th dose independent rect. 15 6
372 119.28 temperature 10.0 1440 > th dose independent rect. 21 18
375 119.28 radiation 40.0 90 < th dose dependent rect. 15 2
382 119.30 radiation 40.0 270 < th dose independent rect. 6 19
388 119.32 temperature 10.0 90 > th dose independent rect. 7 7
389 119.32 atmosphere 995.0 90 > th dose independent rect. 7 7
390 119.32 atmosphere 1015.0 90 < th dose independent rect. 7 7
391 119.32 temperature 10.0 90 > th dose independent rect. 14 17
396 119.34 atmosphere 995.0 10 > th dose independent rect. 14 6
400 119.36 wind 9.0 90 < th dose independent rect. 14 17
407 119.38 wind 9.0 90 < th dose independent rect. 7 7
411 119.39 radiation 10.0 270 < th dose independent rect. 1 5
413 119.39 wind 9.0 270 < th dose dependent rect. 1 5
431 119.41 wind 1.0 270 > th dose independent rect. 17 9
454 119.46 wind 9.0 30 < th dose independent rect. 9 5
455 119.46 humidity 50.0 270 > th dose independent rect. 6 7
467 119.49 atmosphere 1015.0 270 < th dose independent rect. 6 19
470 119.50 precipitation 0.1 90 < th dose independent rect. 7 7
472 119.50 precipitation 0.1 90 < th dose dependent rect. 7 7
477 119.51 atmosphere 995.0 10 > th dose dependent rect. 14 6
479 119.52 temperature 10.0 1440 > th dose independent rect. 10 5
485 119.52 temperature 10.0 1440 > th dose independent rect. 15 19
498 119.55 radiation 1.0 30 > th dose independent rect. 9 5
515 119.58 precipitation 0.1 270 < th dose independent rect. 1 5
522 119.58 precipitation 0.1 270 < th dose dependent rect. 1 5
531 119.60 humidity 90.0 270 > th dose independent rect. 2 3
544 119.61 temperature 10.0 30 > th dose independent rect. 9 5
546 119.61 atmosphere 995.0 30 > th dose independent rect. 9 5
547 119.61 atmosphere 1015.0 30 < th dose independent rect. 9 5
550 119.61 temperature 10.0 30 > th dose independent rect. 14 19
553 119.62 wind 7.0 270 < th dose independent rect. 1 5
554 119.62 precipitation 0.1 30 < th dose independent rect. 9 5
557 119.62 precipitation 0.1 30 < th dose dependent rect. 9 5
585 119.65 radiation 20.0 270 < th dose dependent rect. 1 5
587 119.66 atmosphere 1000.0 270 > th dose independent rect. 1 5
603 119.68 temperature 10.0 270 > th dose independent rect. 1 5
605 119.68 temperature 30.0 270 < th dose independent rect. 1 5
606 119.68 humidity 50.0 270 > th dose independent rect. 1 5
610 119.68 atmosphere 1015.0 270 < th dose independent rect. 1 5
623 119.68 temperature 10.0 270 > th dose independent rect. 6 19
629 119.69 temperature 25.0 270 > th dose independent rect. 18 18
634 119.70 wind 9.0 10 < th dose independent rect. 15 18
657 119.73 atmosphere 995.0 270 > th dose independent rect. 17 8
665 119.74 precipitation 0.1 270 < th dose independent rect. 6 19
668 119.74 precipitation 0.1 270 < th dose dependent rect. 6 19
688 119.77 radiation 40.0 10 < th dose dependent rect. 14 19
726 119.82 precipitation 0.1 90 < th dose independent rect. 14 17
730 119.82 precipitation 0.1 90 < th dose dependent rect. 14 17
737 119.83 wind 9.0 270 < th dose independent rect. 6 19
747 119.85 temperature 10.0 30 > th dose dependent rect. 9 5
765 119.89 radiation 1.0 90 > th dose independent rect. 7 7
778 119.90 humidity 80.0 270 > th dose independent rect. 23 7
780 119.90 atmosphere 1015.0 270 < th dose independent rect. 6 17
786 119.91 wind 1.0 30 > th dose independent rect. 9 5
797 119.94 wind 1.0 270 > th dose independent rect. 6 7
801 119.94 wind 1.0 270 > th dose dependent rect. 9 1
809 119.95 temperature 10.0 90 > th dose dependent rect. 14 16
815 119.96 temperature 10.0 10 > th dose dependent rect. 7 8
819 119.97 atmosphere 995.0 30 > th dose independent rect. 14 19
820 119.97 radiation 40.0 270 < th dose independent rect. 17 21
840 120.00 temperature 10.0 270 > th dose dependent rect. 1 5
852 120.01 precipitation 0.1 30 < th dose independent rect. 14 19
856 120.01 radiation 40.0 270 < th dose dependent rect. 6 19
857 120.01 precipitation 0.1 30 < th dose dependent rect. 14 19
860 120.02 humidity 70.0 90 < th dose independent rect. 15 5
912 120.07 radiation 1.0 270 < th dose independent rect. 1 16
956 120.14 temperature 10.0 270 > th dose dependent rect. 17 8
960 120.15 humidity 50.0 30 > th dose independent rect. 9 5
968 120.16 radiation 30.0 30 < th dose independent rect. 9 6
970 120.16 temperature 10.0 10 > th dose independent rect. 7 8
972 120.16 atmosphere 995.0 10 > th dose independent rect. 7 8
973 120.16 atmosphere 1015.0 10 < th dose independent rect. 7 8
974 120.16 temperature 10.0 10 > th dose independent rect. 15 16
980 120.17 precipitation 0.1 10 < th dose independent rect. 7 8
984 120.17 precipitation 0.1 10 < th dose dependent rect. 7 8
988 120.18 temperature 25.0 90 > th dose independent rect. 20 18