Os02g0126400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Protein kinase CPK1.
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Os02g0126400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Protein kinase CPK1.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 109.68 | 0.492 | 11 | -0.588 | 0.601 | 0.664 | 0.979 | -0.347 | 0.21 | 18.9 | 21.1 | 373 | -- | -- |
| 110.08 | 0.489 | 11 | -0.507 | 0.597 | 0.682 | 0.809 | -- | 0.228 | 18.9 | 21.11 | 372 | -- | -- |
| 111.75 | 0.492 | 11 | -0.552 | 0.603 | 0.704 | -- | -0.0937 | 0.231 | 19 | 20.94 | 376 | -- | -- |
| 111.78 | 0.492 | 11 | -0.532 | 0.602 | 0.713 | -- | -- | 0.232 | 19 | 20.92 | 376 | -- | -- |
| 130.11 | 0.531 | 11 | -0.584 | -- | 0.83 | -- | 0.0109 | 0.176 | -- | 21.1 | 456 | -- | -- |
| 128.85 | 0.532 | 10.9 | -0.279 | 0.711 | -- | 0.843 | -- | 0.408 | 18.7 | -- | -- | -- | -- |
| 130.65 | 0.535 | 10.9 | -0.293 | 0.713 | -- | -- | -- | 0.41 | 18.7 | -- | -- | -- | -- |
| 130.09 | 0.531 | 11 | -0.592 | -- | 0.825 | -- | -- | 0.181 | -- | 21.18 | 456 | -- | -- |
| 118.32 | 0.507 | 11 | -- | 0.625 | 0.566 | -- | -- | 0.31 | 18.9 | 21.24 | 365 | -- | -- |
| 157.25 | 0.586 | 10.9 | -0.309 | -- | -- | -- | -- | 0.396 | -- | -- | -- | -- | -- |
| 132.91 | 0.539 | 10.9 | -- | 0.717 | -- | -- | -- | 0.443 | 18.7 | -- | -- | -- | -- |
| 138.18 | 0.547 | 11 | -- | -- | 0.684 | -- | -- | 0.273 | -- | 21.2 | 390 | -- | -- |
| 159.77 | 0.59 | 10.9 | -- | -- | -- | -- | -- | 0.431 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 106.49 | temperature | 20.0 | 270 | > th | dose independent | rect. | 21 | 10 |
| 3 | 106.96 | temperature | 20.0 | 10 | > th | dose independent | rect. | 22 | 10 |
| 14 | 108.72 | temperature | 20.0 | 270 | > th | dose independent | rect. | 10 | 22 |
| 15 | 108.76 | temperature | 20.0 | 270 | > th | dose independent | rect. | 11 | 20 |
| 19 | 108.88 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 21 | 10 |
| 22 | 109.42 | temperature | 20.0 | 10 | > th | dose independent | sin | 9 | NA |
| 24 | 109.48 | temperature | 20.0 | 270 | > th | dose independent | sin | 11 | NA |
| 31 | 109.83 | temperature | 20.0 | 10 | > th | dose independent | rect. | 12 | 20 |
| 73 | 111.15 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 74 | 111.15 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 20 | 6 |
| 85 | 111.53 | temperature | 20.0 | 720 | > th | dose independent | rect. | 20 | 5 |
| 87 | 111.54 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 18 | 10 |
| 93 | 111.62 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 22 | 10 |
| 101 | 111.72 | temperature | 20.0 | 10 | > th | dose independent | rect. | 17 | 15 |
| 109 | 111.82 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 112 | 111.83 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 22 | 1 |
| 116 | 111.84 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 22 | 1 |
| 118 | 111.85 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 139 | 112.12 | temperature | 20.0 | 10 | < th | dose independent | sin | 9 | NA |
| 165 | 112.38 | temperature | 20.0 | 90 | < th | dose independent | sin | 10 | NA |
| 180 | 112.48 | precipitation | 0.1 | 90 | > th | dose independent | rect. | 3 | 16 |
| 188 | 112.52 | temperature | 20.0 | 90 | < th | dose independent | rect. | 20 | 10 |
| 191 | 112.55 | temperature | 20.0 | 10 | < th | dose independent | rect. | 21 | 9 |
| 197 | 112.58 | temperature | 20.0 | 270 | < th | dose independent | rect. | 15 | 18 |
| 199 | 112.59 | temperature | 20.0 | 90 | < th | dose independent | rect. | 16 | 14 |
| 232 | 112.73 | temperature | 20.0 | 10 | < th | dose independent | rect. | 21 | 13 |
| 242 | 112.77 | temperature | 25.0 | 720 | < th | dose dependent | sin | 13 | NA |
| 270 | 112.94 | temperature | 20.0 | 90 | < th | dose independent | rect. | 13 | 17 |
| 272 | 112.94 | precipitation | 0.1 | 90 | > th | dose independent | rect. | 22 | 21 |
| 273 | 112.94 | temperature | 20.0 | 270 | > th | dose independent | rect. | 20 | 23 |
| 281 | 112.99 | temperature | 20.0 | 720 | < th | dose independent | rect. | 16 | 12 |
| 285 | 113.00 | atmosphere | 1015.0 | 43200 | > th | dose independent | rect. | 18 | 3 |
| 294 | 113.02 | atmosphere | 1015.0 | 43200 | > th | dose dependent | rect. | 17 | 7 |
| 301 | 113.04 | atmosphere | 1015.0 | 43200 | > th | dose dependent | rect. | 20 | 2 |
| 302 | 113.04 | atmosphere | 1015.0 | 43200 | > th | dose dependent | rect. | 18 | 5 |
| 310 | 113.07 | wind | 1.0 | 14400 | > th | dose independent | rect. | 23 | 3 |
| 326 | 113.11 | temperature | 20.0 | 270 | < th | dose independent | rect. | 8 | 21 |
| 340 | 113.15 | atmosphere | 1015.0 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 387 | 113.25 | wind | 1.0 | 14400 | < th | dose independent | rect. | 23 | 3 |
| 409 | 113.27 | temperature | 20.0 | 10 | < th | dose independent | rect. | 16 | 18 |
| 412 | 113.27 | wind | 5.0 | 14400 | < th | dose dependent | rect. | 22 | 1 |
| 436 | 113.30 | atmosphere | 1015.0 | 43200 | > th | dose dependent | sin | 16 | NA |
| 439 | 113.31 | temperature | 20.0 | 720 | < th | dose independent | rect. | 19 | 8 |
| 449 | 113.33 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 22 | 11 |
| 484 | 113.39 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 21 | 12 |
| 496 | 113.40 | wind | 7.0 | 14400 | > th | dose independent | rect. | 23 | 2 |
| 503 | 113.41 | temperature | 20.0 | 90 | < th | dose independent | rect. | 23 | 6 |
| 572 | 113.54 | atmosphere | 1015.0 | 43200 | < th | dose independent | rect. | 15 | 6 |
| 592 | 113.56 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 21 | 5 |
| 662 | 113.67 | temperature | 20.0 | 10 | < th | dose independent | rect. | 14 | 20 |
| 673 | 113.68 | atmosphere | 1015.0 | 43200 | > th | dose dependent | rect. | 11 | 8 |
| 706 | 113.71 | temperature | 20.0 | 10 | < th | dose independent | rect. | 12 | 22 |
| 708 | 113.71 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 721 | 113.72 | atmosphere | 1015.0 | 43200 | > th | dose dependent | rect. | 12 | 4 |
| 776 | 113.78 | precipitation | 0.1 | 90 | > th | dose independent | sin | 1 | NA |
| 826 | 113.84 | atmosphere | 1015.0 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 831 | 113.85 | atmosphere | 1015.0 | 43200 | < th | dose independent | rect. | 15 | 9 |
| 845 | 113.87 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 3 | 5 |
| 855 | 113.88 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 1 | 8 |
| 891 | 113.91 | temperature | 20.0 | 270 | > th | dose independent | no | NA | NA |
| 911 | 113.93 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 954 | 113.96 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 22 | 1 |
| 975 | 113.99 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 17 | 6 |
| 990 | 114.00 | temperature | 20.0 | 270 | < th | dose independent | rect. | 20 | 23 |