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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0126300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : MAP65/ASE1 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.83 (0.0461) R2 : 0.363
β1 : 1.25 (0.171) R2dD : 0.0786 R2D : -0.0869
β2 : 0.627 (0.119) R2dC : 0.04 R2C : -0.0184
β3 : 1.49 (0.123) R2dE : 0.231 R2E : -0.00905
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 1.21 (0.102) R2dN8 : 0.293 R2N8 : 0.0589
σ : 0.85
deviance : 333.43
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_____
C
peak time of C : 6.11
E
wheather : humidity
threshold : 70.42
memory length : 1465
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 9.92
open length of G : 3.77

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
327.61 0.85 3.85 1.06 0.647 1.39 -0.972 1.07 1.14 6.13 70.22 1457 9.92 3.77
331.13 0.848 3.84 1.19 0.644 1.47 -1.1 -- 1.18 6.1 70.44 1465 9.9 3.75
329.92 0.846 3.85 1.06 0.645 1.41 -- 1.09 1.15 6.13 70.22 1458 9.92 3.77
333.43 0.85 3.83 1.25 0.627 1.49 -- -- 1.21 6.11 70.42 1465 9.92 3.77
350.9 0.872 3.86 1.11 -- 1.44 -- 1.07 1.17 -- 70.4 1463 9.72 3.85
436.12 0.979 3.91 0.772 0.651 -- -1.12 -- 0.833 6.4 -- -- -- --
439.09 0.981 3.91 0.759 0.647 -- -- -- 0.838 6.66 -- -- -- --
351 0.873 3.81 1.29 -- 1.6 -- -- 1.27 -- 71 1489 9.53 3.97
365.97 0.891 3.85 -- 0.722 1.6 -- -- 1.16 5.83 71.18 1491 10.4 3.26
460.91 1 3.92 0.775 -- -- -- -- 0.85 -- -- -- -- --
454.29 0.997 3.92 -- 0.656 -- -- -- 0.753 6.59 -- -- -- --
387.05 0.916 3.87 -- -- 1.42 -- -- 1.05 -- 72 1476 10.4 3.25
476.74 1.02 3.94 -- -- -- -- -- 0.765 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 328.74 humidity 70.0 1440 > th dose independent rect. 10 4
8 334.95 humidity 70.0 1440 > th dose independent rect. 5 10
11 335.03 humidity 70.0 1440 > th dose independent rect. 20 19
12 335.04 humidity 70.0 1440 > th dose independent rect. 22 17
20 335.26 humidity 70.0 1440 < th dose independent rect. 10 4
60 339.42 humidity 70.0 1440 < th dose independent rect. 6 9
73 340.10 humidity 70.0 1440 > th dose independent sin 3 NA
111 341.68 humidity 90.0 1440 < th dose dependent rect. 24 15
112 341.69 humidity 60.0 1440 > th dose dependent rect. 9 5
131 342.34 humidity 50.0 1440 > th dose dependent rect. 2 13
149 342.97 humidity 60.0 1440 > th dose dependent rect. 5 10
178 343.40 humidity 60.0 1440 > th dose dependent rect. 7 8
192 343.63 humidity 70.0 1440 < th dose independent sin 3 NA
257 345.42 humidity 90.0 1440 < th dose dependent sin 4 NA
269 345.82 humidity 80.0 1440 < th dose dependent rect. 20 19
298 346.25 humidity 60.0 1440 > th dose dependent sin 3 NA
349 346.86 humidity 60.0 1440 > th dose dependent rect. 11 2
553 350.51 humidity 70.0 1440 > th dose independent rect. 9 23
571 350.76 humidity 70.0 1440 > th dose independent rect. 5 20
579 350.78 humidity 70.0 1440 > th dose independent rect. 5 18
615 350.84 humidity 70.0 1440 > th dose independent no NA NA
656 350.95 humidity 70.0 1440 > th dose independent rect. 9 16
661 350.97 humidity 70.0 1440 > th dose independent rect. 9 14
759 352.25 humidity 70.0 1440 < th dose independent rect. 9 23
770 352.54 humidity 70.0 1440 < th dose independent no NA NA
965 354.21 wind 9.0 43200 < th dose dependent rect. 5 1
989 354.45 wind 1.0 43200 > th dose dependent rect. 5 1
998 354.57 precipitation 0.1 14400 > th dose independent rect. 14 2
1000 354.57 precipitation 0.1 14400 > th dose dependent rect. 14 2