Os02g0125700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Lil3 protein.
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Os02g0125700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Lil3 protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 72.08 | 0.399 | 13.7 | 0.253 | 1.16 | -2.16 | 0.419 | 20.6 | -0.55 | 2.6 | 29.19 | 99 | -- | -- |
| 82.55 | 0.426 | 13.9 | -0.84 | 1.24 | 0.344 | 0.138 | -- | -0.61 | 2.61 | 29.19 | 99 | -- | -- |
| 70.83 | 0.392 | 13.7 | 0.4 | 1.08 | -2.24 | -- | 20.2 | -0.536 | 2.63 | 28.86 | 149 | -- | -- |
| 81.22 | 0.422 | 13.9 | -0.847 | 1.25 | 0.599 | -- | -- | -0.601 | 2.63 | 30.5 | 2 | -- | -- |
| 127.02 | 0.525 | 13.7 | 0.717 | -- | -2.87 | -- | 19.3 | -0.408 | -- | 28.1 | 199 | -- | -- |
| 83.68 | 0.429 | 13.9 | -0.817 | 1.19 | -- | 0.0692 | -- | -0.618 | 2.59 | -- | -- | -- | -- |
| 83.7 | 0.428 | 13.9 | -0.819 | 1.19 | -- | -- | -- | -0.618 | 2.59 | -- | -- | -- | -- |
| 136.56 | 0.547 | 13.8 | -0.61 | -- | -1.1 | -- | -- | -0.468 | -- | 24.1 | 82 | -- | -- |
| 99.98 | 0.468 | 13.8 | -- | 1.22 | 0.45 | -- | -- | -0.512 | 2.61 | 30.5 | 2 | -- | -- |
| 166.94 | 0.604 | 13.9 | -0.769 | -- | -- | -- | -- | -0.588 | -- | -- | -- | -- | -- |
| 101.38 | 0.471 | 13.8 | -- | 1.18 | -- | -- | -- | -0.527 | 2.58 | -- | -- | -- | -- |
| 146.14 | 0.565 | 13.8 | -- | -- | -1.19 | -- | -- | -0.387 | -- | 23.96 | 70 | -- | -- |
| 182.52 | 0.631 | 13.8 | -- | -- | -- | -- | -- | -0.503 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 69.17 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 12 | 20 |
| 3 | 69.94 | humidity | 60.0 | 90 | > th | dose independent | rect. | 12 | 3 |
| 4 | 70.02 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 12 | 14 |
| 9 | 70.38 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 2 | 12 |
| 10 | 70.39 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 5 | 9 |
| 15 | 70.44 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 8 | 6 |
| 21 | 70.76 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 12 | 4 |
| 26 | 71.05 | temperature | 30.0 | 90 | > th | dose independent | rect. | 8 | 7 |
| 51 | 71.28 | temperature | 30.0 | 90 | > th | dose independent | rect. | 12 | 2 |
| 56 | 71.42 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 15 | 23 |
| 60 | 71.52 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 12 | 8 |
| 73 | 71.75 | temperature | 30.0 | 270 | > th | dose independent | sin | 7 | NA |
| 80 | 71.90 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 12 | 10 |
| 83 | 71.94 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 12 | 1 |
| 85 | 71.97 | temperature | 25.0 | 270 | > th | dose dependent | sin | 5 | NA |
| 86 | 71.99 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 10 | 21 |
| 87 | 72.00 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 12 | 12 |
| 98 | 72.22 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 13 | 23 |
| 100 | 72.23 | temperature | 30.0 | 270 | < th | dose independent | rect. | 13 | 23 |
| 102 | 72.26 | atmosphere | 1000.0 | 90 | > th | dose dependent | rect. | 12 | 3 |
| 103 | 72.26 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 12 | 4 |
| 104 | 72.27 | humidity | 60.0 | 270 | > th | dose independent | rect. | 12 | 1 |
| 125 | 72.40 | humidity | 60.0 | 10 | > th | dose independent | rect. | 12 | 20 |
| 131 | 72.46 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 12 | 3 |
| 159 | 72.58 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 12 | 6 |
| 171 | 72.72 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 12 | 23 |
| 175 | 72.76 | temperature | 20.0 | 30 | > th | dose independent | rect. | 12 | 4 |
| 180 | 72.80 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 12 | 1 |
| 196 | 72.97 | humidity | 50.0 | 270 | > th | dose independent | rect. | 13 | 23 |
| 213 | 73.10 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 12 | 8 |
| 214 | 73.11 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 12 | 1 |
| 222 | 73.19 | temperature | 30.0 | 30 | < th | dose independent | rect. | 12 | 3 |
| 223 | 73.20 | humidity | 50.0 | 30 | > th | dose independent | rect. | 8 | 4 |
| 253 | 73.31 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 12 | 1 |
| 273 | 73.34 | wind | 1.0 | 30 | > th | dose independent | rect. | 8 | 4 |
| 296 | 73.47 | radiation | 30.0 | 270 | < th | dose independent | rect. | 12 | 1 |
| 299 | 73.50 | wind | 1.0 | 30 | > th | dose dependent | rect. | 8 | 4 |
| 300 | 73.51 | radiation | 1.0 | 30 | > th | dose independent | rect. | 8 | 4 |
| 301 | 73.52 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 9 | 4 |
| 304 | 73.52 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 9 | 4 |
| 305 | 73.52 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 13 | 20 |
| 316 | 73.56 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 7 | 4 |
| 318 | 73.58 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 3 | 10 |
| 321 | 73.59 | temperature | 10.0 | 30 | > th | dose independent | rect. | 8 | 4 |
| 323 | 73.59 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 8 | 4 |
| 324 | 73.59 | atmosphere | 1015.0 | 30 | < th | dose independent | rect. | 8 | 4 |
| 325 | 73.59 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 8 | 4 |
| 326 | 73.59 | temperature | 10.0 | 30 | > th | dose independent | rect. | 12 | 20 |
| 327 | 73.59 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 8 | 4 |
| 338 | 73.63 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 7 | 2 |
| 353 | 73.75 | atmosphere | 1000.0 | 720 | > th | dose independent | rect. | 3 | 11 |
| 354 | 73.75 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 12 | 20 |
| 356 | 73.75 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 12 | 20 |
| 357 | 73.76 | wind | 3.0 | 270 | > th | dose independent | rect. | 12 | 1 |
| 369 | 73.78 | temperature | 30.0 | 270 | < th | dose independent | rect. | 12 | 1 |
| 371 | 73.78 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 12 | 20 |
| 372 | 73.79 | radiation | 1.0 | 10 | > th | dose dependent | rect. | 8 | 4 |
| 395 | 73.89 | atmosphere | 1000.0 | 10 | < th | dose independent | rect. | 10 | 6 |
| 397 | 73.89 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 12 | 20 |
| 411 | 73.97 | wind | 3.0 | 90 | > th | dose independent | rect. | 12 | 3 |
| 413 | 73.98 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 5 | 7 |
| 420 | 74.02 | radiation | 1.0 | 90 | > th | dose independent | rect. | 12 | 19 |
| 424 | 74.03 | wind | 9.0 | 30 | < th | dose independent | rect. | 12 | 20 |
| 440 | 74.05 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 7 | 12 |
| 442 | 74.06 | atmosphere | 1000.0 | 30 | > th | dose independent | sin | 21 | NA |
| 447 | 74.07 | wind | 9.0 | 30 | < th | dose independent | rect. | 8 | 4 |
| 452 | 74.08 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 10 | 8 |
| 509 | 74.21 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 8 | 1 |
| 514 | 74.22 | temperature | 30.0 | 10 | < th | dose independent | rect. | 15 | 23 |
| 526 | 74.24 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 12 | 6 |
| 548 | 74.31 | atmosphere | 1000.0 | 720 | > th | dose independent | rect. | 5 | 7 |
| 557 | 74.32 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 12 | 20 |
| 560 | 74.34 | atmosphere | 1000.0 | 10 | < th | dose independent | sin | 20 | NA |
| 575 | 74.37 | atmosphere | 1005.0 | 270 | < th | dose dependent | rect. | 8 | 6 |
| 581 | 74.38 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 14 | 1 |
| 609 | 74.46 | wind | 1.0 | 90 | > th | dose dependent | rect. | 12 | 3 |
| 610 | 74.46 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 12 | 8 |
| 622 | 74.49 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 2 | 6 |
| 633 | 74.52 | temperature | 30.0 | 270 | < th | dose dependent | sin | 0 | NA |
| 664 | 74.58 | radiation | 1.0 | 30 | > th | dose independent | rect. | 12 | 4 |
| 690 | 74.63 | wind | 1.0 | 30 | > th | dose independent | rect. | 12 | 20 |
| 708 | 74.67 | atmosphere | 1010.0 | 90 | < th | dose independent | rect. | 12 | 3 |
| 709 | 74.67 | atmosphere | 1010.0 | 10 | < th | dose independent | rect. | 12 | 4 |
| 723 | 74.68 | wind | 1.0 | 270 | > th | dose dependent | rect. | 12 | 1 |
| 752 | 74.73 | atmosphere | 1000.0 | 10 | < th | dose independent | rect. | 9 | 15 |
| 754 | 74.73 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 12 | 23 |
| 755 | 74.74 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 13 | 4 |
| 761 | 74.74 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 17 | 20 |
| 766 | 74.74 | radiation | 1.0 | 10 | > th | dose dependent | rect. | 16 | 20 |
| 767 | 74.75 | temperature | 10.0 | 90 | > th | dose independent | rect. | 12 | 3 |
| 770 | 74.75 | temperature | 10.0 | 90 | > th | dose independent | rect. | 15 | 21 |
| 774 | 74.76 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 12 | 3 |
| 776 | 74.76 | temperature | 20.0 | 10 | > th | dose independent | rect. | 12 | 8 |
| 777 | 74.76 | wind | 9.0 | 270 | < th | dose independent | rect. | 13 | 23 |
| 778 | 74.76 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 12 | 3 |
| 793 | 74.79 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 10 | 11 |
| 841 | 74.85 | wind | 9.0 | 90 | < th | dose independent | rect. | 12 | 3 |
| 849 | 74.85 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 15 | 21 |
| 855 | 74.85 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 15 | 21 |
| 861 | 74.87 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 13 | 6 |
| 866 | 74.87 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 19 | 18 |
| 869 | 74.87 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 19 | 18 |
| 879 | 74.89 | humidity | 60.0 | 270 | > th | dose independent | rect. | 8 | 1 |
| 880 | 74.89 | wind | 3.0 | 14400 | > th | dose independent | rect. | 10 | 5 |
| 890 | 74.91 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 12 | 1 |
| 916 | 74.93 | radiation | 1.0 | 30 | > th | dose independent | rect. | 12 | 7 |
| 928 | 74.93 | wind | 9.0 | 90 | < th | dose independent | rect. | 15 | 21 |
| 939 | 74.94 | radiation | 40.0 | 10 | < th | dose independent | rect. | 13 | 19 |
| 946 | 74.96 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 23 | 23 |
| 963 | 74.99 | radiation | 1.0 | 10 | > th | dose dependent | rect. | 5 | 7 |
| 983 | 75.01 | wind | 3.0 | 14400 | < th | dose independent | rect. | 10 | 5 |