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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0123800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.48 (0.0769) R2 : 0.532
β1 : -0.434 (0.397) R2dD : 0.00295 R2D : -0.0502
β2 : 2 (0.189) R2dC : 0.111 R2C : 0.0905
β3 : 4.06 (0.286) R2dE : 0.244 R2E : 0.117
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 10.4 (1.19) R2dD*E : 0.169 R2D*E : 0.156
γ1 : 1.5 (0.186) R2dN8 : 0.125 R2N8 : 0.014
σ : 1.38
deviance : 883.2
__
_____
C
peak time of C : 3.97
E
wheather : radiation
threshold : 1.59
memory length : 5783
response mode : < th
dose dependency : dose independent
G
type of G : sin
peak or start time of G : 5.17
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
887.82 1.4 5.42 -0.643 2.06 3.78 1.5 9.92 1.5 3.78 1.55 5773 6.06 --
1058.01 1.51 5.39 0.366 1.83 3.69 1.9 -- 1.87 4.21 2.22 5782 6.82 --
883.2 1.38 5.48 -0.434 2 4.06 -- 10.4 1.5 3.97 1.59 5783 5.17 --
1018.97 1.49 5.35 1.39 1.95 3.88 -- -- 2.03 4.19 1.999 5768 5.79 --
1006.15 1.48 5.43 -0.292 -- 4.18 -- 10.5 1.5 -- 2.09 5897 5.17 --
1522.39 1.83 5.57 1.84 1.91 -- 1.2 -- 1.02 3.61 -- -- -- --
1526.56 1.83 5.57 1.83 1.92 -- -- -- 1.02 3.73 -- -- -- --
1105.11 1.55 5.29 1.96 -- 4.08 -- -- 1.93 -- 2.174 16211 5.46 --
1079.69 1.53 5.36 -- 1.99 3.93 -- -- 1.88 3.98 2.15 5768 6.33 --
1730.93 1.94 5.57 1.91 -- -- -- -- 1.07 -- -- -- -- --
1614.37 1.88 5.62 -- 1.96 -- -- -- 0.814 3.72 -- -- -- --
1112.64 1.55 5.36 -- -- 5.82 -- -- 2.12 -- 2.194 16323 7 --
1826.7 1.99 5.62 -- -- -- -- -- 0.857 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 881.82 temperature 25 14400 > th dose dependent rect. 17 1
17 889.91 temperature 30 14400 < th dose independent rect. 15 2
23 892.24 temperature 30 14400 > th dose independent rect. 15 2
25 893.13 temperature 30 14400 < th dose independent rect. 14 18
26 893.14 temperature 30 14400 < th dose independent rect. 14 9
27 893.15 temperature 30 14400 < th dose independent rect. 14 7
28 893.15 temperature 30 14400 < th dose independent rect. 14 13
32 893.17 temperature 30 14400 < th dose independent rect. 14 5
60 894.43 temperature 30 14400 > th dose independent rect. 14 5
81 895.11 temperature 25 14400 > th dose dependent rect. 15 14
126 898.54 temperature 25 14400 > th dose dependent sin 15 NA
140 899.91 humidity 80 14400 < th dose independent rect. 19 1
145 900.46 temperature 30 14400 < th dose independent sin 13 NA
152 901.09 temperature 25 14400 > th dose independent rect. 19 1
162 901.87 temperature 30 14400 > th dose independent sin 13 NA
211 904.48 humidity 70 14400 > th dose independent rect. 18 2
255 906.59 temperature 10 14400 > th dose dependent rect. 17 2
262 907.06 temperature 25 14400 < th dose independent rect. 7 1
307 908.68 temperature 25 14400 < th dose independent rect. 19 1
327 909.59 humidity 90 14400 < th dose dependent rect. 18 2
353 910.32 temperature 30 14400 < th dose dependent rect. 18 1
358 910.39 humidity 80 14400 < th dose independent rect. 17 3
362 910.54 temperature 25 14400 > th dose dependent rect. 3 20
398 910.92 humidity 70 14400 > th dose independent rect. 18 13
426 911.36 humidity 70 14400 > th dose independent rect. 18 7
428 911.38 humidity 70 14400 > th dose independent rect. 18 5
430 911.39 humidity 70 14400 > th dose independent rect. 18 9
454 911.48 humidity 70 14400 > th dose independent rect. 18 11
467 911.68 temperature 25 14400 > th dose dependent no NA NA
493 912.13 temperature 25 14400 > th dose independent rect. 7 1
679 915.87 wind 5 43200 < th dose independent rect. 5 2
815 917.87 humidity 90 14400 < th dose dependent rect. 17 6
839 918.16 humidity 60 14400 > th dose dependent rect. 18 2