FiT-DB / Search/ Help/ Sample detail
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Os02g0123600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to CDP-diacylglycerol--inositol 3-phosphatidyltransferase 1 (EC 2.7.8.11) (Phosphatidylinositol synthase 1) (PtdIns synthase 1) (PI synthase 1) (AtPIS1).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 30.22 | 0.258 | 11.4 | -1.71 | 0.194 | 1.19 | 1.04 | 3.13 | -0.348 | 22.3 | 0.5102 | 5716 | -- | -- |
| 37.46 | 0.287 | 11.3 | -1.41 | 0.351 | 0.334 | -0.821 | -- | -0.357 | 13.5 | 13.53 | 5808 | -- | -- |
| 32.69 | 0.266 | 11.4 | -1.73 | 0.143 | 1.37 | -- | 3.53 | -0.343 | 20.9 | 0.05999 | 5769 | -- | -- |
| 40.09 | 0.297 | 11.3 | -1.44 | 0.304 | 0.276 | -- | -- | -0.362 | 14.4 | 13.53 | 5808 | -- | -- |
| 33.59 | 0.27 | 11.4 | -1.71 | -- | 1.41 | -- | 3.72 | -0.355 | -- | 0.06 | 5847 | -- | -- |
| 39.6 | 0.295 | 11.3 | -1.41 | 0.14 | -- | 0.852 | -- | -0.366 | 21.9 | -- | -- | -- | -- |
| 41.38 | 0.301 | 11.3 | -1.44 | 0.201 | -- | -- | -- | -0.364 | 19 | -- | -- | -- | -- |
| 39.57 | 0.293 | 11.3 | -1.22 | -- | 0.397 | -- | -- | -0.289 | -- | 0.009965 | 11513 | -- | -- |
| 94.68 | 0.456 | 11.3 | -- | 0.352 | 0.299 | -- | -- | -0.201 | 14.3 | 13.53 | 5808 | -- | -- |
| 43.52 | 0.308 | 11.3 | -1.45 | -- | -- | -- | -- | -0.368 | -- | -- | -- | -- | -- |
| 96.19 | 0.459 | 11.3 | -- | 0.218 | -- | -- | -- | -0.204 | 18.6 | -- | -- | -- | -- |
| 38.31 | 0.288 | 11.2 | -- | -- | 1.21 | -- | -- | 0.126 | -- | 0.004755 | 47520 | -- | -- |
| 98.68 | 0.464 | 11.3 | -- | -- | -- | -- | -- | -0.208 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 28.12 | temperature | 15 | 43200 | > th | dose independent | rect. | 3 | 2 |
| 6 | 28.30 | temperature | 15 | 43200 | < th | dose independent | rect. | 4 | 1 |
| 8 | 28.32 | humidity | 80 | 43200 | > th | dose dependent | rect. | 24 | 16 |
| 14 | 28.34 | humidity | 80 | 43200 | > th | dose dependent | rect. | 1 | 14 |
| 46 | 28.47 | humidity | 80 | 43200 | > th | dose dependent | sin | 5 | NA |
| 82 | 28.60 | humidity | 80 | 43200 | > th | dose dependent | rect. | 9 | 21 |
| 127 | 28.70 | radiation | 30 | 43200 | > th | dose independent | rect. | 16 | 16 |
| 164 | 28.77 | humidity | 80 | 43200 | > th | dose dependent | rect. | 13 | 23 |
| 169 | 28.78 | humidity | 80 | 43200 | > th | dose dependent | no | NA | NA |
| 179 | 28.80 | temperature | 15 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 180 | 28.80 | radiation | 30 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 237 | 28.89 | temperature | 15 | 43200 | > th | dose independent | sin | 8 | NA |
| 255 | 28.92 | radiation | 30 | 43200 | < th | dose independent | rect. | 21 | 10 |
| 274 | 28.94 | humidity | 80 | 43200 | > th | dose dependent | rect. | 2 | 23 |
| 278 | 28.95 | radiation | 30 | 43200 | > th | dose dependent | rect. | 16 | 16 |
| 300 | 28.99 | temperature | 15 | 43200 | < th | dose independent | rect. | 23 | 1 |
| 302 | 28.99 | radiation | 30 | 43200 | < th | dose independent | rect. | 24 | 7 |
| 321 | 29.02 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 15 | 6 |
| 341 | 29.04 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 19 | 3 |
| 348 | 29.06 | humidity | 80 | 43200 | > th | dose dependent | sin | 15 | NA |
| 359 | 29.07 | radiation | 30 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 403 | 29.11 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 17 | 6 |
| 420 | 29.14 | radiation | 40 | 43200 | < th | dose independent | rect. | 6 | 2 |
| 421 | 29.14 | radiation | 40 | 43200 | < th | dose independent | rect. | 2 | 6 |
| 435 | 29.15 | humidity | 90 | 43200 | < th | dose independent | rect. | 23 | 16 |
| 439 | 29.15 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 14 | 10 |
| 479 | 29.20 | humidity | 90 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 482 | 29.20 | humidity | 90 | 43200 | < th | dose independent | rect. | 23 | 12 |
| 502 | 29.22 | temperature | 15 | 43200 | < th | dose independent | sin | 9 | NA |
| 522 | 29.24 | radiation | 1 | 43200 | > th | dose independent | rect. | 9 | 3 |
| 530 | 29.24 | radiation | 1 | 43200 | < th | dose dependent | rect. | 9 | 3 |
| 550 | 29.26 | humidity | 80 | 43200 | > th | dose dependent | rect. | 22 | 1 |
| 555 | 29.27 | radiation | 1 | 43200 | > th | dose independent | rect. | 8 | 5 |
| 575 | 29.28 | radiation | 1 | 43200 | < th | dose independent | rect. | 9 | 3 |
| 577 | 29.28 | radiation | 1 | 43200 | < th | dose independent | rect. | 7 | 6 |
| 585 | 29.29 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 18 | 2 |
| 605 | 29.31 | humidity | 90 | 43200 | > th | dose independent | rect. | 24 | 8 |
| 630 | 29.33 | humidity | 90 | 43200 | > th | dose independent | rect. | 24 | 11 |
| 644 | 29.34 | humidity | 80 | 43200 | > th | dose dependent | rect. | 17 | 9 |
| 656 | 29.35 | humidity | 90 | 43200 | > th | dose independent | rect. | 24 | 16 |
| 680 | 29.37 | humidity | 90 | 43200 | < th | dose independent | sin | 7 | NA |
| 692 | 29.37 | temperature | 20 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 770 | 29.43 | humidity | 80 | 43200 | > th | dose dependent | rect. | 21 | 3 |
| 801 | 29.45 | temperature | 20 | 43200 | < th | dose dependent | rect. | 16 | 4 |
| 844 | 29.48 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 14 | 1 |
| 859 | 29.49 | humidity | 90 | 43200 | < th | dose independent | rect. | 23 | 1 |
| 901 | 29.50 | temperature | 20 | 43200 | < th | dose dependent | rect. | 11 | 10 |
| 904 | 29.50 | radiation | 20 | 43200 | < th | dose dependent | rect. | 18 | 12 |
| 920 | 29.51 | humidity | 80 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 942 | 29.53 | radiation | 30 | 43200 | < th | dose independent | rect. | 16 | 5 |
| 944 | 29.53 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 14 | 6 |
| 965 | 29.54 | temperature | 15 | 43200 | > th | dose independent | no | NA | NA |
| 966 | 29.54 | humidity | 80 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 969 | 29.54 | radiation | 30 | 43200 | < th | dose independent | rect. | 16 | 10 |
| 995 | 29.55 | radiation | 30 | 43200 | < th | dose independent | rect. | 16 | 3 |
