Os02g0123500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to NADPH-dependent mannose 6-phosphate reductase.
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Os02g0123500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to NADPH-dependent mannose 6-phosphate reductase.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 15.7 | 0.186 | 13.2 | -0.602 | 1.05 | -0.293 | -0.301 | -1.47 | -0.186 | 20.1 | 1.14 | 17282 | -- | -- |
| 16.72 | 0.19 | 13.1 | -0.22 | 1.07 | -0.26 | -0.322 | -- | -0.0698 | 20 | 10.38 | 29448 | -- | -- |
| 15.91 | 0.186 | 13.2 | -0.603 | 1.05 | -0.296 | -- | -1.52 | -0.188 | 20.2 | 1.142 | 17189 | -- | -- |
| 16.86 | 0.191 | 13.1 | -0.207 | 1.1 | -0.309 | -- | -- | -0.0541 | 20 | 10 | 29448 | -- | -- |
| 60.11 | 0.363 | 13.1 | -0.266 | -- | -0.427 | -- | 0.193 | -0.16 | -- | 1.142 | 17189 | -- | -- |
| 19.67 | 0.208 | 13.2 | -0.27 | 1.05 | -- | -0.306 | -- | -0.158 | 20.1 | -- | -- | -- | -- |
| 19.95 | 0.209 | 13.2 | -0.262 | 1.05 | -- | -- | -- | -0.158 | 20.1 | -- | -- | -- | -- |
| 60.35 | 0.363 | 13.1 | -0.267 | -- | -0.425 | -- | -- | -0.161 | -- | 1.142 | 17189 | -- | -- |
| 17.62 | 0.195 | 13.1 | -- | 1.12 | -0.341 | -- | -- | -0.0528 | 20.1 | 10.04 | 34142 | -- | -- |
| 80.56 | 0.419 | 13.1 | -0.271 | -- | -- | -- | -- | -0.171 | -- | -- | -- | -- | -- |
| 21.75 | 0.218 | 13.2 | -- | 1.05 | -- | -- | -- | -0.129 | 20 | -- | -- | -- | -- |
| 61.49 | 0.366 | 13.1 | -- | -- | -0.433 | -- | -- | -0.124 | -- | 1.861 | 46331 | -- | -- |
| 82.5 | 0.424 | 13.1 | -- | -- | -- | -- | -- | -0.141 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 14.99 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 5 | 11 |
| 2 | 15.00 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 5 | 10 |
| 48 | 15.03 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 6 | 2 |
| 49 | 15.03 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 6 | 2 |
| 52 | 15.03 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 19 | 21 |
| 87 | 15.04 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 5 | 10 |
| 90 | 15.04 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 1 | 15 |
| 102 | 15.05 | radiation | 1.0 | 43200 | > th | dose independent | sin | 3 | NA |
| 104 | 15.05 | radiation | 1.0 | 43200 | < th | dose independent | sin | 2 | NA |
| 135 | 15.06 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 23 | 2 |
| 140 | 15.06 | radiation | 1.0 | 43200 | < th | dose dependent | sin | 4 | NA |
| 166 | 15.07 | radiation | 1.0 | 43200 | < th | dose dependent | sin | 2 | NA |
| 169 | 15.07 | atmosphere | 1005.0 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 207 | 15.09 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 5 | 5 |
| 357 | 15.14 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 3 | 8 |
| 358 | 15.14 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 3 | 8 |
| 361 | 15.14 | radiation | 1.0 | 43200 | < th | dose dependent | no | NA | NA |
| 368 | 15.14 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 3 | 8 |
| 418 | 15.15 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 6 | 19 |
| 472 | 15.15 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 12 | 22 |
| 473 | 15.15 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 9 | 23 |
| 502 | 15.16 | atmosphere | 1005.0 | 43200 | > th | dose dependent | rect. | 3 | 1 |
| 545 | 15.17 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 2 | 11 |
| 546 | 15.17 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 2 | 11 |
| 562 | 15.17 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 2 | 11 |
| 586 | 15.18 | atmosphere | 1005.0 | 43200 | > th | dose dependent | sin | 14 | NA |
| 623 | 15.19 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 3 | 5 |
| 649 | 15.19 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 3 | 5 |
| 679 | 15.20 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 3 | 5 |
| 737 | 15.20 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 9 | 9 |
| 764 | 15.21 | radiation | 1.0 | 43200 | > th | dose independent | no | NA | NA |
| 765 | 15.21 | radiation | 1.0 | 43200 | < th | dose independent | no | NA | NA |
| 883 | 15.21 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 3 | 9 |
| 936 | 15.22 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 11 | 23 |
| 940 | 15.22 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 11 | 23 |