Os02g0122900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Dimethyladenosine transferase.
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Os02g0122900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Dimethyladenosine transferase.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 127.31 | 0.53 | 7.43 | -0.981 | 1.11 | 1.3 | -1.25 | 0.951 | -0.642 | 22.3 | 24.84 | 10 | -- | -- |
| 127.69 | 0.526 | 7.44 | -1.06 | 1.13 | 1.36 | -1.3 | -- | -0.663 | 22.3 | 24.8 | 13 | -- | -- |
| 132.86 | 0.537 | 7.42 | -0.803 | 1.13 | 1.24 | -- | 1.96 | -0.653 | 22.4 | 23.48 | 7 | -- | -- |
| 134.69 | 0.541 | 7.44 | -1.06 | 1.12 | 1.43 | -- | -- | -0.676 | 22.5 | 24.87 | 13 | -- | -- |
| 175.28 | 0.617 | 7.43 | -1.12 | -- | 1.39 | -- | -0.17 | -0.733 | -- | 23.53 | 657 | -- | -- |
| 160.05 | 0.593 | 7.41 | -0.879 | 1.03 | -- | -1.37 | -- | -0.548 | 20.7 | -- | -- | -- | -- |
| 166.11 | 0.604 | 7.41 | -0.832 | 1.04 | -- | -- | -- | -0.546 | 20.5 | -- | -- | -- | -- |
| 175.3 | 0.617 | 7.42 | -1.13 | -- | 1.35 | -- | -- | -0.716 | -- | 23.79 | 658 | -- | -- |
| 162.83 | 0.594 | 7.41 | -- | 1.09 | 1.18 | -- | -- | -0.533 | 22.1 | 25 | 13 | -- | -- |
| 226.81 | 0.704 | 7.38 | -0.836 | -- | -- | -- | -- | -0.556 | -- | -- | -- | -- | -- |
| 184.34 | 0.635 | 7.39 | -- | 1.04 | -- | -- | -- | -0.454 | 20.5 | -- | -- | -- | -- |
| 206.86 | 0.67 | 7.38 | -- | -- | 1.14 | -- | -- | -0.55 | -- | 24.3 | 602 | -- | -- |
| 245.24 | 0.731 | 7.36 | -- | -- | -- | -- | -- | -0.464 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 124.71 | temperature | 20.0 | 270 | > th | dose dependent | sin | 4 | NA |
| 13 | 126.62 | temperature | 25.0 | 270 | > th | dose independent | rect. | 23 | 17 |
| 17 | 126.73 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 18 | 126.77 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 7 | 23 |
| 23 | 127.00 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 27 | 127.18 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 33 | 127.29 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 37 | 127.37 | temperature | 25.0 | 10 | > th | dose dependent | no | NA | NA |
| 38 | 127.40 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 55 | 127.66 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 2 | 10 |
| 58 | 127.70 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 1 | 20 |
| 111 | 128.21 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 7 | 15 |
| 112 | 128.22 | temperature | 30.0 | 270 | < th | dose dependent | sin | 4 | NA |
| 118 | 128.28 | temperature | 25.0 | 270 | > th | dose independent | sin | 4 | NA |
| 130 | 128.39 | temperature | 25.0 | 270 | < th | dose independent | rect. | 3 | 8 |
| 140 | 128.48 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 19 | 23 |
| 149 | 128.55 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 7 | 13 |
| 156 | 128.58 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 23 | 16 |
| 189 | 128.83 | temperature | 25.0 | 270 | < th | dose independent | sin | 4 | NA |
| 238 | 129.09 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 6 | 10 |
| 327 | 129.75 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 21 | 14 |
| 423 | 130.40 | temperature | 30.0 | 90 | < th | dose dependent | sin | 2 | NA |
| 427 | 130.43 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 3 |
| 430 | 130.43 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 4 | 19 |
| 439 | 130.48 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 464 | 130.68 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 11 | 23 |
| 466 | 130.71 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 10 |
| 475 | 130.75 | temperature | 25.0 | 270 | < th | dose independent | rect. | 1 | 21 |
| 482 | 130.78 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 2 | 9 |
| 521 | 131.03 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 9 |
| 531 | 131.08 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 6 |
| 535 | 131.10 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 9 |
| 537 | 131.10 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 9 |
| 547 | 131.16 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 6 |
| 550 | 131.16 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 6 |
| 572 | 131.30 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 24 | 11 |
| 615 | 131.52 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 6 | 4 |
| 618 | 131.53 | temperature | 25.0 | 720 | > th | dose independent | rect. | 23 | 12 |
| 621 | 131.53 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 7 | 2 |
| 635 | 131.60 | temperature | 25.0 | 720 | > th | dose independent | rect. | 1 | 10 |
| 639 | 131.61 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 12 |
| 645 | 131.63 | temperature | 25.0 | 720 | > th | dose independent | rect. | 5 | 5 |
| 719 | 131.96 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 20 | 4 |
| 724 | 131.97 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 745 | 132.05 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 786 | 132.19 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 801 | 132.23 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 9 | 10 |
| 802 | 132.23 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 9 | 10 |
| 820 | 132.32 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 20 | 22 |
| 839 | 132.38 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 6 | 12 |
| 843 | 132.38 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 6 | 12 |
| 860 | 132.43 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 10 | 16 |
| 892 | 132.50 | precipitation | 0.1 | 14400 | > th | dose dependent | sin | 16 | NA |
| 895 | 132.51 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 6 | 12 |
| 920 | 132.56 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 6 | 20 |
| 927 | 132.59 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 9 | 10 |