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Os02g0122500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.2 (0.0337) R2 : 0.424
β1 : -0.8 (0.125) R2dD : 0.0554 R2D : -0.128
β2 : -- (--) R2dC : -- R2C : --
β3 : -1.02 (0.101) R2dE : 0.135 R2E : -0.033
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -1.18 (0.0723) R2dN8 : 0.454 R2N8 : 0.262
σ : 0.629
deviance : 182.25
__
_____
C
peak time of C : --
E
wheather : humidity
threshold : 70
memory length : 1300
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
167.19 0.608 11.2 -0.849 0.563 -1.2 0.78 -0.0568 -1.18 10.5 69.85 1167 -- --
166.93 0.602 11.2 -0.854 0.608 -1.23 0.775 -- -1.18 10.4 69.67 1134 -- --
169.14 0.606 11.2 -0.865 0.6 -1.23 -- 0.333 -1.19 10.3 69.62 1134 -- --
169.36 0.606 11.2 -0.829 0.598 -1.21 -- -- -1.17 10.4 70 1134 -- --
182.3 0.629 11.2 -0.784 -- -1.01 -- -0.0607 -1.09 -- 68.03 1305 -- --
217.28 0.691 11.2 -0.585 0.295 -- 0.534 -- -1.09 8.74 -- -- -- --
218.18 0.692 11.2 -0.569 0.298 -- -- -- -1.09 8.38 -- -- -- --
182.25 0.629 11.2 -0.8 -- -1.02 -- -- -1.18 -- 70 1300 -- --
186.49 0.636 11.2 -- 0.559 -1.08 -- -- -1.08 10.4 69.88 1134 -- --
223.11 0.698 11.2 -0.567 -- -- -- -- -1.09 -- -- -- -- --
226.7 0.704 11.2 -- 0.295 -- -- -- -1.03 8.52 -- -- -- --
198.96 0.657 11.2 -- -- -0.94 -- -- -1.15 -- 69 1299 -- --
231.59 0.71 11.2 -- -- -- -- -- -1.02 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 165.12 humidity 70.0 1440 > th dose independent rect. 11 2
3 166.66 wind 1.0 43200 < th dose dependent rect. 5 2
4 167.89 humidity 70.0 1440 < th dose independent rect. 11 2
6 168.68 wind 5.0 43200 < th dose dependent rect. 5 1
8 168.82 wind 1.0 43200 < th dose dependent rect. 23 8
10 169.35 humidity 80.0 1440 < th dose dependent rect. 11 1
13 169.60 wind 1.0 43200 > th dose independent rect. 5 2
14 169.71 wind 1.0 43200 < th dose independent rect. 5 2
16 169.88 wind 9.0 43200 < th dose independent rect. 10 4
17 169.89 wind 1.0 43200 < th dose dependent rect. 3 10
18 169.95 humidity 80.0 1440 < th dose dependent rect. 10 3
21 170.11 precipitation 0.1 43200 > th dose dependent rect. 15 5
22 170.12 humidity 60.0 1440 > th dose dependent rect. 11 1
30 170.52 wind 1.0 43200 < th dose independent rect. 22 9
33 170.65 precipitation 0.1 43200 < th dose independent rect. 16 2
34 170.65 precipitation 0.1 43200 < th dose dependent rect. 16 2
39 170.88 humidity 50.0 1440 > th dose dependent rect. 9 5
42 170.93 wind 1.0 43200 < th dose dependent rect. 1 13
48 171.01 precipitation 0.1 43200 > th dose independent rect. 16 2
50 171.03 humidity 70.0 1440 > th dose independent rect. 23 15
56 171.04 humidity 70.0 1440 > th dose independent rect. 2 12
59 171.04 wind 1.0 43200 > th dose dependent rect. 5 1
68 171.12 wind 1.0 43200 < th dose independent rect. 22 12
89 171.37 wind 1.0 43200 < th dose independent sin 8 NA
91 171.41 precipitation 0.1 43200 > th dose dependent rect. 18 3
106 171.53 wind 1.0 43200 < th dose dependent sin 7 NA
134 171.80 humidity 80.0 1440 < th dose independent rect. 7 7
142 171.91 humidity 80.0 1440 < th dose independent rect. 7 5
144 171.95 wind 7.0 43200 > th dose dependent rect. 11 2
165 172.35 wind 1.0 14400 > th dose independent rect. 2 5
181 172.56 wind 1.0 43200 > th dose independent rect. 23 10
187 172.65 precipitation 0.1 43200 > th dose dependent rect. 13 7
207 172.73 wind 1.0 43200 < th dose independent rect. 1 13
210 172.75 wind 5.0 43200 < th dose dependent rect. 22 10
212 172.77 wind 1.0 43200 < th dose independent rect. 5 4
215 172.78 humidity 80.0 1440 < th dose dependent sin 5 NA
298 173.36 wind 9.0 43200 > th dose independent rect. 10 4
307 173.44 radiation 10.0 1440 < th dose dependent rect. 6 5
309 173.45 wind 1.0 43200 < th dose independent rect. 3 10
311 173.47 wind 1.0 14400 < th dose independent rect. 3 4
312 173.47 precipitation 0.1 14400 > th dose independent rect. 6 11
325 173.53 humidity 70.0 1440 > th dose independent rect. 17 21
327 173.56 humidity 70.0 1440 > th dose independent sin 4 NA
350 173.62 precipitation 0.1 14400 < th dose independent rect. 6 11
351 173.62 precipitation 0.1 14400 < th dose dependent rect. 6 11
357 173.68 wind 7.0 43200 > th dose dependent rect. 10 4
372 173.82 wind 1.0 43200 > th dose independent sin 8 NA
409 174.11 wind 9.0 43200 < th dose independent rect. 11 2
424 174.21 wind 1.0 43200 > th dose independent rect. 1 12
445 174.36 radiation 20.0 43200 < th dose dependent rect. 9 1
471 174.50 precipitation 0.1 14400 > th dose dependent rect. 6 11
476 174.53 radiation 30.0 1440 < th dose dependent rect. 6 6
479 174.55 precipitation 0.1 14400 > th dose dependent rect. 16 1
484 174.56 wind 1.0 43200 > th dose independent rect. 3 10
499 174.61 radiation 10.0 43200 > th dose independent rect. 7 3
503 174.63 humidity 70.0 1440 < th dose independent sin 3 NA
530 174.79 wind 9.0 43200 > th dose independent rect. 11 2
539 174.81 wind 1.0 43200 < th dose dependent rect. 3 6
559 174.91 radiation 10.0 1440 > th dose independent rect. 8 3
562 174.91 precipitation 0.1 14400 < th dose independent rect. 4 14
563 174.91 precipitation 0.1 14400 < th dose dependent rect. 4 14
565 174.92 precipitation 0.1 14400 > th dose independent rect. 4 14
595 174.98 radiation 30.0 1440 < th dose dependent rect. 18 18
613 175.03 radiation 30.0 1440 < th dose dependent rect. 2 10
617 175.04 radiation 30.0 1440 < th dose dependent rect. 23 13
650 175.14 humidity 70.0 1440 > th dose independent rect. 4 14
651 175.14 humidity 70.0 1440 > th dose independent rect. 23 19
657 175.15 humidity 70.0 1440 > th dose independent rect. 6 12
659 175.15 humidity 70.0 1440 > th dose independent rect. 2 16
679 175.19 humidity 70.0 1440 < th dose independent rect. 17 21
691 175.22 precipitation 0.1 14400 > th dose dependent rect. 14 3
705 175.30 humidity 60.0 14400 < th dose independent rect. 11 2
723 175.37 humidity 70.0 1440 < th dose independent rect. 9 9
732 175.43 wind 5.0 43200 < th dose dependent sin 9 NA
742 175.45 radiation 10.0 1440 < th dose dependent rect. 6 8
744 175.46 wind 1.0 43200 > th dose dependent rect. 20 12
745 175.46 radiation 10.0 1440 < th dose dependent rect. 22 13
746 175.46 radiation 10.0 1440 < th dose dependent rect. 19 16
753 175.48 radiation 10.0 1440 < th dose dependent rect. 2 9
765 175.51 humidity 70.0 1440 < th dose independent rect. 6 12
816 175.58 radiation 10.0 43200 > th dose independent rect. 6 5
877 175.70 radiation 20.0 1440 < th dose independent rect. 17 19
878 175.71 radiation 20.0 1440 < th dose independent rect. 4 9
879 175.71 radiation 20.0 1440 < th dose independent rect. 2 11
884 175.72 radiation 20.0 1440 < th dose independent rect. 6 7
886 175.72 radiation 20.0 1440 < th dose independent rect. 23 14
892 175.73 radiation 20.0 43200 > th dose independent rect. 9 3
942 175.83 humidity 50.0 1440 > th dose dependent sin 2 NA
950 175.88 wind 1.0 14400 > th dose independent rect. 2 8