Os02g0122000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to P18.
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Os02g0122000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to P18.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 44.64 | 0.314 | 11.5 | -1.13 | 0.272 | -1.36 | 0.195 | 2.75 | -0.381 | 18 | 30 | 1533 | -- | -- |
| 48.33 | 0.324 | 11.5 | -1.02 | 0.286 | -1.55 | 0.0982 | -- | -0.256 | 17.1 | 22.82 | 9685 | -- | -- |
| 44.72 | 0.311 | 11.5 | -1.12 | 0.275 | -1.36 | -- | 2.73 | -0.38 | 18.2 | 29.9 | 1530 | -- | -- |
| 47.63 | 0.321 | 11.5 | -1.18 | 0.278 | -1.74 | -- | -- | -0.337 | 18 | 22.53 | 9745 | -- | -- |
| 46.76 | 0.318 | 11.5 | -1.27 | -- | -1.37 | -- | 3.25 | -0.373 | -- | 42.64 | 1939 | -- | -- |
| 83.25 | 0.428 | 11.4 | -0.0707 | 0.26 | -- | 0.291 | -- | 0.0812 | 18.1 | -- | -- | -- | -- |
| 83.44 | 0.428 | 11.4 | -0.0743 | 0.262 | -- | -- | -- | 0.082 | 18.4 | -- | -- | -- | -- |
| 51.52 | 0.334 | 11.5 | -1.15 | -- | -1.76 | -- | -- | -0.354 | -- | 22.85 | 9353 | -- | -- |
| 55.85 | 0.348 | 11.4 | -- | 0.32 | -1.31 | -- | -- | -0.109 | 16.7 | 24.06 | 1099 | -- | -- |
| 87.01 | 0.436 | 11.4 | -0.0811 | -- | -- | -- | -- | 0.0764 | -- | -- | -- | -- | -- |
| 83.59 | 0.428 | 11.4 | -- | 0.263 | -- | -- | -- | 0.0903 | 18.4 | -- | -- | -- | -- |
| 58.27 | 0.356 | 11.4 | -- | -- | -1.23 | -- | -- | -0.125 | -- | 29.84 | 494 | -- | -- |
| 87.18 | 0.436 | 11.4 | -- | -- | -- | -- | -- | 0.0854 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 43.40 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 5 |
| 3 | 43.43 | temperature | 30 | 1440 | < th | dose dependent | rect. | 16 | 8 |
| 6 | 43.49 | temperature | 15 | 1440 | > th | dose dependent | rect. | 17 | 6 |
| 50 | 43.87 | temperature | 30 | 1440 | < th | dose dependent | sin | 15 | NA |
| 75 | 43.95 | temperature | 15 | 1440 | > th | dose dependent | sin | 15 | NA |
| 132 | 44.15 | temperature | 15 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 321 | 44.64 | temperature | 30 | 1440 | < th | dose dependent | rect. | 2 | 22 |
| 352 | 44.70 | temperature | 30 | 1440 | < th | dose dependent | no | NA | NA |
| 475 | 44.89 | temperature | 15 | 1440 | > th | dose dependent | no | NA | NA |
| 489 | 44.90 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 23 |