FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0121700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Terpene synthase-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.32 (0.139) R2 : 0.512
β1 : 1.29 (0.451) R2dD : 0.0155 R2D : -0.144
β2 : 2.03 (0.215) R2dC : 0.0835 R2C : 0.0788
β3 : -10.8 (0.918) R2dE : 0.911 R2E : -0.11
β4 : -4.09 (0.982) R2dD*C : 0.0229 R2D*C : 0.00432
β5 : -27.1 (4.14) R2dD*E : 0.293 R2D*E : -0.352
γ1 : 2.13 (0.204) R2dN8 : 0.198 R2N8 : -0.0202
σ : 1.55
deviance : 1084.69
__
_____
C
peak time of C : 17.2
E
wheather : radiation
threshold : 1.5
memory length : 4320
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 3.99
open length of G : 1

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
1084.69 1.55 5.32 1.29 2.03 -10.8 -4.09 -27.1 2.13 17.2 1.5 4320 3.99 1
1249.79 1.65 4.55 1.28 2.31 -9.61 -3.97 -- 2.74 17 1.453 4314 3.98 1.18
1126.58 1.56 5.32 1.29 2.03 -10.8 -- -26.9 2.13 17.2 1.5 4320 3.99 1
1227.33 1.63 4.45 0.287 2.23 -8.07 -- -- 2.57 16.8 1.263 4317 3.99 1.16
1326.85 1.7 5.32 1.24 -- -10.9 -- -26.5 2.04 -- 1.673 4320 3.99 1.02
1532.86 1.84 4.83 -3.14 1.96 -- -4.21 -- 1.31 17.3 -- -- -- --
1573.96 1.86 4.84 -3.14 1.95 -- -- -- 1.29 17.8 -- -- -- --
1362.38 1.72 4.56 -1.25 -- -5.49 -- -- 2.22 -- 0.6085 4333 4 1.17
1172.44 1.59 4.56 -- 2.21 -7.1 -- -- 2.45 17.6 1.101 4317 4 1.1
1771.96 1.97 4.81 -3.2 -- -- -- -- 1.25 -- -- -- -- --
1834.02 2 4.77 -- 2 -- -- -- 1.64 17.7 -- -- -- --
1369.45 1.72 4.57 -- -- -6.65 -- -- 2.34 -- 0.9753 4325 4.01 1.1
2042.43 2.11 4.73 -- -- -- -- -- 1.6 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 1094.74 radiation 1 4320 < th dose dependent rect. 4 1
5 1116.23 wind 1 43200 > th dose independent rect. 2 1
7 1130.06 wind 1 43200 < th dose independent rect. 2 1
8 1131.26 radiation 1 4320 < th dose dependent rect. 18 12
14 1143.52 radiation 1 4320 < th dose dependent sin 11 NA
15 1143.93 radiation 1 4320 < th dose dependent rect. 18 16
32 1150.23 radiation 40 43200 < th dose independent rect. 6 2
38 1151.58 radiation 40 43200 < th dose independent rect. 1 7
40 1152.37 wind 9 43200 > th dose dependent rect. 18 1
45 1154.33 radiation 40 43200 < th dose independent rect. 23 9
53 1155.67 radiation 40 43200 < th dose independent rect. 16 16
54 1155.68 radiation 40 43200 < th dose independent rect. 19 13
61 1158.64 radiation 1 4320 < th dose dependent rect. 18 8
66 1159.17 humidity 90 14400 > th dose dependent rect. 5 1
67 1159.18 radiation 1 14400 < th dose independent rect. 18 8
69 1159.30 radiation 1 4320 < th dose dependent rect. 18 3
79 1159.66 radiation 1 14400 < th dose independent rect. 18 3
82 1159.73 wind 9 43200 < th dose independent rect. 18 1
94 1161.20 wind 9 43200 > th dose independent rect. 18 1
111 1163.78 radiation 1 43200 < th dose independent rect. 4 1
114 1164.23 radiation 10 43200 < th dose independent rect. 18 12
120 1164.72 radiation 1 43200 > th dose independent rect. 4 1
130 1164.72 radiation 1 43200 > th dose dependent rect. 4 1
145 1165.35 radiation 40 43200 < th dose independent rect. 15 3
148 1165.44 radiation 40 43200 < th dose independent rect. 15 5
152 1165.74 humidity 90 14400 > th dose independent rect. 21 9
156 1166.07 radiation 40 43200 < th dose independent rect. 15 9
178 1166.72 humidity 90 14400 > th dose dependent rect. 24 9
179 1166.77 radiation 1 43200 < th dose independent rect. 1 4
181 1167.14 radiation 40 43200 < th dose independent rect. 15 11
186 1167.73 wind 1 43200 < th dose dependent rect. 2 1
196 1168.46 radiation 20 14400 > th dose independent rect. 6 1
216 1169.16 radiation 10 43200 < th dose independent rect. 22 8
262 1171.62 humidity 90 14400 > th dose independent rect. 22 6
302 1174.23 radiation 1 43200 < th dose dependent rect. 23 6
331 1175.67 radiation 1 4320 < th dose dependent rect. 23 11
340 1175.95 radiation 1 4320 < th dose dependent rect. 4 6
346 1176.22 humidity 90 14400 > th dose independent rect. 23 4
382 1177.18 humidity 90 14400 > th dose independent rect. 23 2
402 1178.60 humidity 80 43200 < th dose independent rect. 17 1
403 1178.64 temperature 20 43200 > th dose independent rect. 7 1
407 1179.32 wind 3 43200 > th dose independent rect. 13 1
414 1180.16 humidity 90 14400 > th dose independent rect. 5 1
418 1180.45 temperature 20 43200 < th dose independent rect. 7 1
434 1181.65 humidity 90 14400 > th dose dependent rect. 23 3
453 1182.04 wind 1 43200 < th dose independent rect. 19 1
456 1182.27 radiation 1 43200 < th dose independent rect. 7 2
459 1182.35 radiation 1 43200 > th dose independent rect. 7 2
463 1182.58 radiation 1 43200 < th dose dependent rect. 6 3
466 1182.65 radiation 1 14400 > th dose independent rect. 18 1
494 1183.51 radiation 1 43200 < th dose dependent rect. 7 1
495 1183.52 radiation 1 43200 > th dose independent rect. 7 8
500 1183.80 radiation 1 43200 < th dose independent rect. 7 8
502 1183.87 radiation 1 43200 < th dose dependent rect. 6 9
505 1183.92 humidity 90 14400 > th dose dependent sin 8 NA
531 1184.34 radiation 1 4320 > th dose independent sin 12 NA
539 1184.56 radiation 1 4320 > th dose independent rect. 16 17
557 1185.15 wind 5 43200 < th dose dependent rect. 13 3
560 1185.32 wind 7 43200 > th dose dependent rect. 24 1
588 1186.19 wind 3 43200 < th dose independent rect. 13 1
619 1187.06 wind 3 43200 > th dose independent rect. 12 4
647 1187.68 wind 7 43200 < th dose dependent rect. 15 1
665 1188.35 radiation 1 4320 > th dose independent rect. 18 12
670 1188.58 atmosphere 1015 43200 > th dose independent rect. 12 1
671 1188.59 atmosphere 1015 43200 < th dose independent rect. 12 1
676 1188.73 radiation 1 4320 < th dose independent rect. 16 17
682 1188.97 radiation 1 4320 < th dose independent sin 12 NA
702 1189.28 radiation 1 14400 < th dose dependent rect. 10 22
709 1189.45 radiation 1 43200 > th dose independent rect. 10 5
757 1190.11 radiation 1 43200 < th dose independent rect. 10 5
762 1190.22 radiation 1 43200 < th dose dependent rect. 10 5
785 1190.54 radiation 1 14400 < th dose dependent rect. 4 22
786 1190.54 radiation 1 14400 < th dose dependent rect. 23 22
789 1190.55 radiation 1 14400 < th dose dependent no NA NA
795 1190.56 radiation 1 14400 < th dose dependent rect. 20 23
818 1190.64 radiation 1 14400 < th dose dependent rect. 4 17
918 1191.89 radiation 1 14400 < th dose dependent rect. 23 15
928 1192.19 radiation 1 14400 < th dose dependent rect. 4 10
938 1192.41 wind 7 43200 > th dose independent rect. 24 1
969 1193.00 wind 1 43200 < th dose dependent rect. 19 1