Os02g0121500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os02g0121500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 81.18 | 0.423 | 13.1 | 3.9 | 2.77 | 136 | -1.39 | 281 | -0.0998 | 13.5 | 15.01 | 4911 | -- | -- |
| 83.84 | 0.43 | 11.2 | -0.44 | 2.78 | 2.33 | -1.43 | -- | -0.183 | 13.5 | 15.01 | 4911 | -- | -- |
| 88.34 | 0.438 | 13.1 | 3.78 | 2.77 | 136 | -- | 282 | -0.104 | 13.5 | 15.01 | 5225 | -- | -- |
| 91.29 | 0.445 | 11.2 | -0.202 | 2.73 | 1.27 | -- | -- | -0.113 | 13.5 | 17.06 | 6426 | -- | -- |
| 554.52 | 1.1 | 13 | 3.57 | -- | 137 | -- | 282 | -0.163 | -- | 14.97 | 5243 | -- | -- |
| 94.02 | 0.455 | 11.2 | -0.539 | 2.74 | -- | -1.15 | -- | -0.208 | 13.5 | -- | -- | -- | -- |
| 99.35 | 0.467 | 11.2 | -0.577 | 2.74 | -- | -- | -- | -0.214 | 13.5 | -- | -- | -- | -- |
| 449.34 | 0.992 | 11.4 | -1.22 | -- | -2.34 | -- | -- | -0.747 | -- | 28.26 | 980 | -- | -- |
| 92.23 | 0.447 | 11.2 | -- | 2.73 | 1.37 | -- | -- | -0.0836 | 13.5 | 17.1 | 6374 | -- | -- |
| 560.57 | 1.11 | 11.2 | -0.687 | -- | -- | -- | -- | -0.273 | -- | -- | -- | -- | -- |
| 108.12 | 0.486 | 11.2 | -- | 2.75 | -- | -- | -- | -0.15 | 13.5 | -- | -- | -- | -- |
| 467.22 | 1.01 | 11.3 | -- | -- | -2.65 | -- | -- | -0.495 | -- | 73.63 | 6 | -- | -- |
| 573.01 | 1.12 | 11.2 | -- | -- | -- | -- | -- | -0.197 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 71.05 | temperature | 20.0 | 720 | > th | dose independent | rect. | 16 | 2 |
| 2 | 71.52 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 16 | 2 |
| 3 | 71.71 | humidity | 90.0 | 720 | < th | dose independent | rect. | 16 | 2 |
| 6 | 72.74 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 16 | 4 |
| 11 | 72.93 | temperature | 15.0 | 270 | > th | dose independent | rect. | 15 | 13 |
| 22 | 73.73 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 18 | 13 |
| 27 | 73.84 | temperature | 20.0 | 720 | > th | dose independent | rect. | 14 | 7 |
| 32 | 73.98 | temperature | 20.0 | 270 | < th | dose dependent | rect. | 17 | 14 |
| 36 | 74.08 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 4 | 8 |
| 54 | 74.32 | temperature | 20.0 | 720 | > th | dose independent | rect. | 12 | 11 |
| 55 | 74.35 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 16 | 12 |
| 63 | 74.44 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 4 | 10 |
| 64 | 74.47 | temperature | 15.0 | 10 | > th | dose independent | rect. | 16 | 13 |
| 88 | 74.86 | atmosphere | 1010.0 | 720 | < th | dose independent | rect. | 16 | 2 |
| 96 | 74.94 | atmosphere | 1015.0 | 10 | < th | dose dependent | rect. | 16 | 13 |
| 105 | 75.04 | temperature | 15.0 | 720 | > th | dose independent | rect. | 16 | 10 |
| 108 | 75.06 | temperature | 20.0 | 720 | > th | dose independent | sin | 19 | NA |
| 111 | 75.08 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 18 | 5 |
| 115 | 75.11 | atmosphere | 1015.0 | 90 | < th | dose dependent | rect. | 16 | 12 |
| 119 | 75.16 | atmosphere | 1010.0 | 10 | < th | dose independent | rect. | 16 | 13 |
| 141 | 75.42 | temperature | 20.0 | 270 | > th | dose independent | sin | 15 | NA |
| 147 | 75.46 | atmosphere | 1010.0 | 90 | < th | dose independent | rect. | 16 | 12 |
| 156 | 75.56 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 4 | 19 |
| 163 | 75.64 | temperature | 20.0 | 270 | < th | dose dependent | sin | 12 | NA |
| 178 | 75.75 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 16 | 13 |
| 195 | 75.92 | temperature | 10.0 | 270 | > th | dose dependent | sin | 14 | NA |
| 217 | 76.09 | temperature | 20.0 | 270 | < th | dose independent | rect. | 18 | 13 |
| 235 | 76.25 | temperature | 10.0 | 720 | > th | dose dependent | sin | 18 | NA |
| 247 | 76.33 | temperature | 15.0 | 720 | > th | dose independent | rect. | 7 | 14 |
| 248 | 76.34 | atmosphere | 1010.0 | 720 | < th | dose independent | rect. | 15 | 5 |
| 277 | 76.52 | atmosphere | 1015.0 | 720 | < th | dose dependent | rect. | 16 | 2 |
| 316 | 76.76 | temperature | 15.0 | 270 | > th | dose independent | rect. | 4 | 23 |
| 376 | 77.09 | temperature | 15.0 | 10 | > th | dose independent | sin | 7 | NA |
| 393 | 77.09 | temperature | 15.0 | 10 | > th | dose independent | sin | 17 | NA |
| 407 | 77.09 | temperature | 15.0 | 10 | > th | dose independent | sin | 1 | NA |
| 422 | 77.10 | atmosphere | 1010.0 | 720 | < th | dose independent | rect. | 10 | 9 |
| 430 | 77.12 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 10 | 14 |
| 437 | 77.14 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 10 | 16 |
| 463 | 77.23 | atmosphere | 1000.0 | 90 | > th | dose independent | rect. | 2 | 9 |
| 529 | 77.48 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 10 | 14 |
| 530 | 77.48 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 10 | 14 |
| 534 | 77.50 | temperature | 30.0 | 270 | < th | dose dependent | sin | 11 | NA |
| 560 | 77.58 | wind | 9.0 | 43200 | < th | dose independent | rect. | 24 | 3 |
| 566 | 77.60 | temperature | 15.0 | 270 | > th | dose independent | rect. | 23 | 23 |
| 572 | 77.62 | wind | 1.0 | 270 | > th | dose independent | rect. | 10 | 14 |
| 658 | 77.85 | temperature | 15.0 | 270 | > th | dose independent | rect. | 7 | 19 |
| 674 | 77.88 | atmosphere | 995.0 | 90 | > th | dose dependent | rect. | 2 | 9 |
| 761 | 78.10 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 24 | 10 |
| 765 | 78.11 | temperature | 10.0 | 270 | > th | dose independent | rect. | 24 | 10 |
| 766 | 78.11 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 24 | 10 |
| 774 | 78.12 | temperature | 30.0 | 270 | < th | dose independent | rect. | 24 | 10 |
| 779 | 78.13 | wind | 9.0 | 270 | < th | dose independent | rect. | 10 | 14 |
| 782 | 78.14 | wind | 9.0 | 270 | < th | dose independent | rect. | 24 | 10 |
| 799 | 78.18 | humidity | 50.0 | 270 | > th | dose independent | rect. | 24 | 10 |
| 812 | 78.21 | temperature | 20.0 | 270 | < th | dose independent | sin | 11 | NA |
| 955 | 78.54 | atmosphere | 1005.0 | 720 | > th | dose independent | rect. | 18 | 6 |
| 956 | 78.54 | temperature | 15.0 | 270 | > th | dose independent | rect. | 19 | 7 |
| 960 | 78.55 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 24 | 10 |
| 962 | 78.55 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 24 | 10 |
| 981 | 78.58 | temperature | 30.0 | 720 | < th | dose dependent | sin | 15 | NA |