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Os02g0120400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Single hybrid motif domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.2 (0.0263) R2 : 0.697
β1 : -0.686 (0.0964) R2dD : 0.0362 R2D : 0.0183
β2 : 3.21 (0.116) R2dC : 1.63 R2C : 0.0712
β3 : 1.63 (0.1) R2dE : 0.558 R2E : -1.02
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.382 (0.0564) R2dN8 : 0.0413 R2N8 : 0.0377
σ : 0.492
deviance : 111.73
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_____
C
peak time of C : 14.9
E
wheather : radiation
threshold : 4.5
memory length : 19
response mode : < th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 3.72
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
111.49 0.496 8.21 -0.706 3.19 1.58 0.565 0.594 -0.39 15 3.611 26 3.46 --
111.84 0.493 8.2 -0.694 3.19 1.57 -0.038 -- -0.373 15 3.899 24 3.62 --
111.87 0.493 8.2 -0.735 3.22 1.63 -- 0.32 -0.391 15 3.846 25 3.59 --
111.73 0.492 8.2 -0.686 3.21 1.63 -- -- -0.382 14.9 4.5 19 3.72 --
141.13 0.553 8.22 -0.762 -- -1.94 -- -0.032 -0.467 -- 61.27 387 4.46 --
143.73 0.562 8.24 -0.725 1.9 -- 0.262 -- -0.457 16.5 -- -- -- --
143.92 0.562 8.24 -0.723 1.9 -- -- -- -0.456 16.5 -- -- -- --
138.88 0.549 8.22 -0.664 -- -1.9 -- -- -0.476 -- 35.13 325 3.43 --
124.51 0.52 8.18 -- 3.22 1.64 -- -- -0.305 14.9 4.21 19 3.82 --
337.66 0.859 8.22 -0.797 -- -- -- -- -0.506 -- -- -- -- --
157.7 0.587 8.22 -- 1.92 -- -- -- -0.375 16.5 -- -- -- --
152.51 0.575 8.2 -- -- -1.9 -- -- -0.399 -- 36.39 335 3.59 --
354.42 0.879 8.2 -- -- -- -- -- -0.418 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 108.29 wind 9.0 90 < th dose dependent rect. 4 5
5 108.77 wind 5.0 270 < th dose independent rect. 3 4
6 108.79 precipitation 0.1 270 < th dose independent rect. 3 4
7 108.79 precipitation 0.1 270 < th dose dependent rect. 3 4
9 109.02 radiation 40.0 90 < th dose independent rect. 4 5
11 109.16 precipitation 0.1 270 < th dose independent rect. 2 6
12 109.16 temperature 10.0 270 > th dose dependent rect. 3 4
13 109.16 precipitation 0.1 270 < th dose dependent rect. 2 6
15 109.20 radiation 10.0 270 < th dose independent rect. 3 4
18 109.28 radiation 20.0 270 < th dose independent rect. 2 6
22 109.35 temperature 30.0 90 < th dose independent rect. 4 5
23 109.37 humidity 60.0 90 > th dose independent rect. 4 5
25 109.45 temperature 10.0 270 > th dose dependent rect. 4 2
27 109.55 precipitation 0.1 90 < th dose independent rect. 9 19
29 109.55 precipitation 0.1 90 < th dose dependent rect. 9 19
32 109.60 wind 7.0 270 < th dose dependent rect. 4 2
36 109.62 temperature 10.0 90 > th dose independent rect. 4 5
39 109.62 atmosphere 995.0 90 > th dose independent rect. 4 5
40 109.62 atmosphere 1015.0 90 < th dose independent rect. 4 5
41 109.62 temperature 10.0 90 > th dose independent rect. 9 19
45 109.69 radiation 40.0 270 < th dose dependent rect. 3 4
51 109.75 wind 9.0 90 < th dose independent rect. 9 19
53 109.80 wind 9.0 270 < th dose independent rect. 7 20
57 109.88 radiation 40.0 270 < th dose dependent rect. 2 7
71 109.98 temperature 10.0 270 > th dose independent rect. 7 20
73 110.04 atmosphere 995.0 90 > th dose dependent rect. 4 5
76 110.12 humidity 70.0 270 > th dose independent rect. 2 6
78 110.13 precipitation 0.1 270 < th dose independent rect. 7 20
79 110.13 precipitation 0.1 270 < th dose dependent rect. 7 20
82 110.16 temperature 10.0 270 > th dose dependent rect. 2 6
101 110.31 temperature 10.0 270 > th dose independent rect. 2 6
103 110.31 temperature 30.0 270 < th dose independent rect. 2 6
104 110.31 humidity 50.0 270 > th dose independent rect. 2 6
106 110.31 atmosphere 995.0 270 > th dose independent rect. 2 6
107 110.31 atmosphere 1015.0 270 < th dose independent rect. 2 6
110 110.41 atmosphere 995.0 270 > th dose dependent rect. 3 3
113 110.42 humidity 50.0 270 > th dose dependent rect. 3 4
117 110.53 radiation 40.0 270 < th dose dependent rect. 15 16
139 110.89 temperature 15.0 90 > th dose independent rect. 4 17
151 110.91 atmosphere 995.0 270 > th dose dependent rect. 2 5
156 110.95 humidity 50.0 90 > th dose dependent rect. 21 7
172 110.99 humidity 50.0 270 > th dose dependent rect. 2 6
198 111.28 radiation 1.0 30 > th dose independent rect. 5 4
239 111.46 radiation 30.0 270 < th dose independent rect. 15 16
280 111.91 temperature 10.0 270 > th dose independent rect. 7 8
281 111.91 atmosphere 1015.0 270 < th dose independent rect. 7 8
282 111.91 temperature 10.0 270 > th dose independent rect. 15 16
285 111.95 precipitation 0.1 270 < th dose independent rect. 7 8
287 111.95 precipitation 0.1 270 < th dose dependent rect. 7 8
291 112.03 wind 9.0 270 < th dose independent rect. 7 8
294 112.07 precipitation 0.1 270 < th dose independent rect. 3 16
295 112.07 precipitation 0.1 270 < th dose dependent rect. 3 16
301 112.15 humidity 60.0 270 > th dose independent rect. 19 8
303 112.19 temperature 10.0 270 > th dose independent rect. 19 8
304 112.19 temperature 30.0 270 < th dose independent rect. 19 8
306 112.19 atmosphere 995.0 270 > th dose independent rect. 19 8
307 112.19 radiation 1.0 270 < th dose independent rect. 19 8
314 112.19 atmosphere 1015.0 270 < th dose independent rect. 3 16
315 112.19 radiation 1.0 270 < th dose dependent rect. 19 8
320 112.20 wind 9.0 90 < th dose independent rect. 21 7
322 112.21 radiation 1.0 90 < th dose dependent rect. 21 7
323 112.22 temperature 10.0 90 > th dose independent rect. 21 7
324 112.22 temperature 30.0 90 < th dose independent rect. 21 7
325 112.22 humidity 50.0 90 > th dose independent rect. 21 7
328 112.22 atmosphere 995.0 90 > th dose independent rect. 21 7
329 112.22 radiation 1.0 90 < th dose independent rect. 21 7
344 112.27 wind 9.0 270 < th dose independent rect. 19 8
346 112.28 atmosphere 995.0 270 > th dose independent rect. 7 8
350 112.33 wind 9.0 270 < th dose independent rect. 15 16
372 112.46 temperature 15.0 270 > th dose independent rect. 2 19
376 112.49 precipitation 0.1 270 < th dose independent rect. 19 8
377 112.49 precipitation 0.1 270 < th dose dependent rect. 19 8
381 112.52 wind 9.0 90 < th dose independent rect. 4 17
393 112.56 atmosphere 1005.0 270 > th dose independent rect. 4 2
394 112.58 atmosphere 995.0 270 > th dose independent rect. 15 16
415 112.64 precipitation 0.1 270 < th dose independent rect. 15 16
417 112.64 precipitation 0.1 270 < th dose dependent rect. 15 16
458 112.81 atmosphere 995.0 90 > th dose independent rect. 9 19
464 112.85 precipitation 0.1 90 < th dose independent rect. 21 7
465 112.85 precipitation 0.1 90 < th dose dependent rect. 21 7
478 112.96 humidity 50.0 270 > th dose independent rect. 7 8
501 113.14 radiation 1.0 30 < th dose dependent sin 9 NA
577 113.77 temperature 10.0 270 > th dose independent rect. 21 5
578 113.77 temperature 30.0 270 < th dose independent rect. 21 5
579 113.77 humidity 50.0 270 > th dose independent rect. 21 5
582 113.77 atmosphere 995.0 270 > th dose independent rect. 21 5
583 113.77 radiation 1.0 270 < th dose independent rect. 21 5
590 113.77 radiation 1.0 270 < th dose dependent rect. 21 5
595 113.78 precipitation 0.1 270 < th dose independent rect. 21 5
596 113.78 precipitation 0.1 270 < th dose dependent rect. 21 5
597 113.80 radiation 1.0 30 < th dose independent sin 10 NA
602 113.82 wind 9.0 90 < th dose dependent rect. 21 7
603 113.83 precipitation 0.1 270 < th dose independent rect. 2 19
604 113.83 precipitation 0.1 270 < th dose dependent rect. 2 19
605 113.84 wind 9.0 270 < th dose independent rect. 21 5
613 113.90 wind 1.0 270 > th dose independent rect. 7 8
614 113.90 atmosphere 1015.0 270 < th dose independent rect. 2 19
617 113.91 atmosphere 995.0 270 > th dose independent rect. 3 16
645 114.07 radiation 1.0 30 > th dose independent sin 10 NA
689 114.21 radiation 1.0 10 < th dose dependent rect. 22 16
725 114.53 radiation 1.0 10 < th dose dependent rect. 22 8
728 114.55 wind 9.0 270 < th dose independent rect. 2 19
735 114.58 atmosphere 1015.0 30 < th dose independent rect. 9 19
739 114.59 radiation 1.0 10 < th dose dependent rect. 22 10
762 114.70 wind 9.0 90 < th dose dependent rect. 4 17
849 115.02 radiation 1.0 10 < th dose independent rect. 22 16
899 115.16 radiation 1.0 10 < th dose independent rect. 22 8