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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0120100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Amino acid-binding ACT domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.01 (0.0272) R2 : 0.705
β1 : 0.875 (0.0993) R2dD : 0.052 R2D : 0.0573
β2 : 2.17 (0.0686) R2dC : 0.649 R2C : 0.643
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.142 (0.0579) R2dN8 : 0.00521 R2N8 : 0.00395
σ : 0.51
deviance : 118.65
__
_____
C
peak time of C : 8.27
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
106.56 0.485 5.02 1.04 1.13 -2.11 -0.139 1.37 -0.0408 11 1.848 789 -- --
108.83 0.486 5.03 1.02 1.17 -1.98 -0.267 -- -0.049 10.7 1.81 790 -- --
106.63 0.481 5.02 1.04 1.13 -2.1 -- 1.43 -0.0405 11 1.848 790 -- --
109.25 0.487 5.03 0.989 1.15 -2.05 -- -- -0.0545 10.9 1.82 790 -- --
127.01 0.525 5.02 1.32 -- -3.1 -- 1.82 0.113 -- 1.56 992 -- --
117.5 0.508 5.01 0.893 2.17 -- -0.609 -- -0.143 8.26 -- -- -- --
118.65 0.51 5.01 0.875 2.17 -- -- -- -0.142 8.27 -- -- -- --
129.07 0.529 5.03 1.12 -- -3.07 -- -- 0.0336 -- 1.416 996 -- --
134.7 0.541 5.05 -- 1.16 -1.86 -- -- -0.117 10.5 2.214 791 -- --
378.17 0.909 5.07 0.89 -- -- -- -- -0.118 -- -- -- -- --
138.81 0.551 5.03 -- 2.17 -- -- -- -0.24 8.24 -- -- -- --
161.37 0.592 5.05 -- -- -3.06 -- -- -0.0468 -- 1.56 978 -- --
399.05 0.932 5.09 -- -- -- -- -- -0.217 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 101.54 radiation 1 720 < th dose dependent rect. 14 9
4 102.18 radiation 1 720 > th dose independent rect. 7 11
7 102.45 radiation 1 720 < th dose dependent rect. 10 13
11 102.61 radiation 1 720 < th dose independent rect. 14 9
16 102.89 radiation 1 720 > th dose independent rect. 7 22
29 102.98 radiation 1 720 > th dose independent rect. 15 3
37 103.28 radiation 1 720 < th dose independent rect. 10 13
41 103.35 radiation 1 720 < th dose independent rect. 7 16
51 103.68 radiation 1 720 > th dose independent rect. 15 14
85 104.25 temperature 25 270 > th dose independent rect. 16 11
105 104.55 radiation 1 720 < th dose dependent sin 18 NA
115 104.92 temperature 25 270 > th dose independent sin 13 NA
116 104.92 radiation 1 720 > th dose independent sin 18 NA
125 105.17 humidity 50 270 > th dose dependent rect. 19 11
128 105.21 temperature 25 270 < th dose independent rect. 13 16
142 105.60 radiation 1 720 < th dose independent sin 19 NA
150 105.73 temperature 25 720 > th dose dependent rect. 15 4
161 105.89 temperature 25 720 > th dose independent rect. 15 4
164 105.99 radiation 1 720 < th dose dependent rect. 13 16
197 106.20 radiation 1 720 < th dose dependent rect. 10 19
202 106.24 humidity 90 90 < th dose independent rect. 18 11
214 106.40 radiation 1 720 < th dose dependent rect. 7 22
238 106.47 humidity 90 270 > th dose dependent sin 17 NA
254 106.50 temperature 10 720 > th dose dependent rect. 3 4
256 106.52 temperature 20 90 > th dose dependent rect. 18 9
263 106.57 humidity 90 90 < th dose independent rect. 18 9
275 106.67 humidity 70 270 > th dose dependent rect. 11 19
282 106.72 temperature 25 720 > th dose dependent rect. 15 11
303 106.87 radiation 1 720 < th dose independent rect. 14 4
321 107.03 radiation 1 720 < th dose independent rect. 3 20
325 107.04 temperature 25 720 > th dose dependent rect. 15 17
337 107.13 humidity 70 270 > th dose dependent rect. 14 16
358 107.23 radiation 1 720 < th dose dependent rect. 14 4
364 107.24 radiation 1 720 < th dose dependent rect. 3 20
373 107.25 wind 1 270 > th dose independent rect. 15 11
399 107.28 radiation 1 720 < th dose independent rect. 7 22
408 107.32 radiation 1 720 < th dose independent rect. 13 16
413 107.36 radiation 1 720 < th dose independent rect. 10 19
428 107.41 radiation 10 1440 < th dose independent rect. 19 10
446 107.47 radiation 1 720 < th dose dependent rect. 7 10
462 107.57 radiation 20 10 < th dose independent rect. 21 12
463 107.57 humidity 90 270 > th dose independent rect. 11 18
473 107.61 radiation 1 720 < th dose independent rect. 10 8
499 107.69 radiation 20 1440 < th dose dependent rect. 19 10
501 107.70 temperature 25 720 > th dose dependent sin 15 NA
516 107.73 humidity 90 270 > th dose dependent rect. 11 16
530 107.77 radiation 1 720 < th dose dependent rect. 10 8
546 107.82 temperature 25 270 < th dose independent sin 14 NA
562 107.85 humidity 90 270 > th dose independent rect. 19 10
574 107.87 humidity 90 270 < th dose independent rect. 15 11
633 108.02 humidity 80 720 < th dose independent rect. 15 3
647 108.06 radiation 1 720 > th dose independent rect. 13 23
672 108.11 humidity 90 90 < th dose independent rect. 7 22
687 108.14 radiation 1 720 < th dose independent rect. 19 23
749 108.28 humidity 90 270 < th dose independent rect. 15 19
810 108.47 humidity 90 90 < th dose independent rect. 7 20
842 108.53 radiation 1 720 > th dose independent rect. 11 7
847 108.54 humidity 90 270 > th dose independent sin 14 NA
913 108.67 humidity 60 270 > th dose dependent sin 12 NA
958 108.75 radiation 1 720 > th dose independent rect. 11 18
961 108.75 radiation 20 720 < th dose dependent rect. 13 18
990 108.80 wind 7 720 < th dose independent rect. 15 4