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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0119200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Adenosine monophosphate binding protein 1 AMPBP1.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.17 (0.0398) R2 : 0.405
β1 : 0.952 (0.149) R2dD : 0.0611 R2D : 0.0435
β2 : 1.23 (0.1) R2dC : 0.196 R2C : 0.172
β3 : -0.976 (0.121) R2dE : 0.109 R2E : 0.098
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.377 (0.0919) R2dN8 : 0.0368 R2N8 : 0.082
σ : 0.725
deviance : 242.37
__
_____
C
peak time of C : 4.87
E
wheather : temperature
threshold : 22.1
memory length : 1491
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
241.82 0.731 9.21 0.78 1.22 -1.1 -0.639 -0.918 -0.456 4.83 21.5 1507 -- --
241.49 0.724 9.17 0.978 1.22 -0.995 -0.555 -- -0.366 4.82 22.1 1489 -- --
242.49 0.725 9.2 0.822 1.22 -1.05 -- -0.671 -0.433 4.88 21.76 1503 -- --
242.37 0.725 9.17 0.952 1.23 -0.976 -- -- -0.377 4.87 22.1 1491 -- --
313.01 0.829 9.2 0.902 -- -0.798 -- 0.166 -0.45 -- 21.76 1503 -- --
275.97 0.779 9.25 0.59 1.2 -- -0.569 -- -0.704 4.87 -- -- -- --
276.79 0.779 9.24 0.592 1.2 -- -- -- -0.701 4.91 -- -- -- --
312.83 0.827 9.21 0.844 -- -0.773 -- -- -0.45 -- 22.1 1491 -- --
263.39 0.76 9.22 -- 1.14 -0.618 -- -- -0.606 5.61 22.1 1491 -- --
352.2 0.877 9.26 0.636 -- -- -- -- -0.67 -- -- -- -- --
286.04 0.791 9.26 -- 1.21 -- -- -- -0.767 4.9 -- -- -- --
296.43 0.802 9.18 -- -- -0.939 -- -- -0.327 -- 24.99 266 -- --
362.89 0.889 9.27 -- -- -- -- -- -0.74 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 230.96 humidity 60.0 14400 < th dose independent rect. 11 1
2 232.45 humidity 60.0 14400 < th dose dependent rect. 13 2
3 233.04 wind 1.0 43200 > th dose independent rect. 4 4
5 233.31 wind 9.0 43200 < th dose independent rect. 18 2
11 233.66 wind 1.0 43200 > th dose dependent rect. 1 1
12 233.67 wind 9.0 43200 > th dose independent rect. 18 2
14 233.90 humidity 80.0 4320 < th dose independent rect. 9 1
17 234.47 wind 3.0 43200 < th dose dependent rect. 5 1
18 234.60 humidity 80.0 4320 > th dose independent rect. 9 1
21 234.69 humidity 60.0 14400 < th dose dependent rect. 11 9
33 234.71 humidity 60.0 14400 < th dose dependent rect. 11 22
56 235.07 precipitation 0.1 14400 < th dose independent rect. 4 4
58 235.07 precipitation 0.1 14400 < th dose dependent rect. 4 4
59 235.10 precipitation 0.1 14400 > th dose dependent rect. 4 4
65 235.20 precipitation 0.1 14400 > th dose independent rect. 4 4
87 235.37 humidity 60.0 14400 < th dose dependent sin 21 NA
123 235.62 wind 1.0 43200 < th dose dependent rect. 5 3
129 235.73 humidity 60.0 14400 < th dose dependent rect. 8 12
191 235.80 humidity 60.0 14400 < th dose dependent no NA NA
290 236.32 humidity 60.0 14400 < th dose independent rect. 8 5
297 236.63 humidity 60.0 14400 < th dose independent rect. 19 18
298 236.65 wind 1.0 43200 < th dose independent rect. 4 4
319 237.03 humidity 60.0 14400 > th dose independent rect. 11 1
320 237.12 wind 9.0 43200 > th dose dependent rect. 18 2
326 237.31 wind 1.0 43200 > th dose independent rect. 22 10
328 237.45 humidity 60.0 14400 < th dose independent sin 6 NA
332 237.54 radiation 10.0 4320 < th dose dependent rect. 7 2
360 238.06 temperature 20.0 1440 < th dose independent rect. 5 1
361 238.06 humidity 60.0 14400 < th dose independent rect. 16 21
385 238.39 humidity 80.0 14400 > th dose independent rect. 2 2
445 238.88 radiation 10.0 43200 > th dose independent rect. 5 1
460 238.93 wind 1.0 43200 < th dose independent rect. 22 10
490 239.20 humidity 60.0 14400 < th dose independent rect. 8 12
567 239.43 humidity 60.0 14400 < th dose independent no NA NA
606 239.47 humidity 60.0 14400 < th dose independent rect. 11 23
638 239.60 wind 9.0 43200 < th dose dependent rect. 1 1
655 239.70 humidity 70.0 14400 < th dose independent rect. 18 15
713 240.07 temperature 20.0 1440 > th dose independent rect. 5 1
714 240.10 precipitation 0.1 43200 > th dose dependent rect. 16 1
716 240.14 radiation 10.0 14400 < th dose independent rect. 12 1
736 240.29 humidity 60.0 14400 > th dose independent rect. 8 5
738 240.32 precipitation 0.1 43200 < th dose independent rect. 21 2
739 240.32 precipitation 0.1 43200 < th dose dependent rect. 21 2
742 240.37 humidity 70.0 14400 > th dose independent rect. 19 14
749 240.43 precipitation 0.1 43200 > th dose independent rect. 21 2
767 240.49 humidity 60.0 14400 > th dose independent rect. 19 18
770 240.50 humidity 60.0 14400 > th dose independent rect. 15 22
786 240.54 radiation 20.0 14400 > th dose dependent rect. 16 16
794 240.64 wind 3.0 43200 > th dose independent rect. 1 1
797 240.70 humidity 60.0 14400 > th dose independent rect. 23 14
802 240.71 humidity 60.0 14400 > th dose independent rect. 2 11
804 240.71 wind 1.0 43200 > th dose independent rect. 16 16
805 240.72 humidity 60.0 14400 > th dose independent rect. 4 9
815 240.76 precipitation 0.1 43200 > th dose dependent rect. 21 2
819 240.79 humidity 80.0 14400 > th dose independent rect. 2 5
825 240.84 precipitation 0.1 43200 > th dose independent rect. 16 1
836 240.97 humidity 80.0 14400 < th dose dependent rect. 6 1
839 240.98 precipitation 0.1 43200 < th dose independent rect. 21 4
841 240.98 precipitation 0.1 43200 < th dose dependent rect. 21 4
845 241.03 precipitation 0.1 43200 < th dose independent rect. 16 1
846 241.03 precipitation 0.1 43200 < th dose dependent rect. 16 1
847 241.03 precipitation 0.1 43200 > th dose dependent rect. 18 2
852 241.06 radiation 20.0 14400 > th dose dependent rect. 7 1
855 241.08 wind 1.0 43200 < th dose independent rect. 16 16
856 241.09 humidity 60.0 14400 > th dose independent sin 7 NA
871 241.15 wind 7.0 43200 > th dose dependent rect. 11 2
942 241.52 radiation 10.0 14400 < th dose independent rect. 12 4
947 241.55 humidity 60.0 14400 > th dose independent rect. 19 22
954 241.60 humidity 60.0 14400 > th dose independent rect. 8 9
970 241.70 humidity 60.0 14400 > th dose independent rect. 8 12
989 241.76 humidity 60.0 14400 > th dose independent rect. 8 21
995 241.77 humidity 60.0 14400 > th dose independent rect. 8 16